Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00901 ATGCTCAAATGTTTTCACATTAAAATCTTCACCCTTCTATATAAGACCCCGTTCATCATACACATATTTTGCAATGGAAGTTATCGACATCACACACACATATTATCCACTGCATTGGATTATTACGGAATTGAGCTTAGAGAAATTCAAGAGATAACAAATAAAAAAATATACCCTCATTCCTCATTATTCATCAGATATATATCATCTTTGAAGCAAACTTGTGATTCAACATTGTTACAAAAAAAGCTCATGATGAGTCTAATTCATAGATTTTTTATCCTATGGATTATTACAATGACACTTTTGATACATAATTTGAGTAATGTGGAAGGAAGATACCACCATCACAAGAAACAAAAGAAAATTTCCCCTGCACCAAGTGAACCTTCACCCCCTATTCAATCTCCTACACCTCCTAGTGTTCCTTCTGATCCATATCCAAATGATCCTGGTGAATCACCTTCTTCTGAATGCATTTTTGATGTGAGGTCTTTTGGAGCTGTTGGAGATGGTGAAGCTGATGATACAGCTGCATTTAGAGCAGCTTGGAAAGCTGCTTGTTCAGTTGATTCAGGAGTTCTTTTTGCTCCTCAAAATTACTGTTTTAAGATTACTTCTACTATCTTTTCAGGTCCATGCAAACCAGGACTTGTATTTCAAATAGATGGTACTTTGATGGCACCAGATGGACCAGATTGTTGGCCTGAGAAAGATAGTCGAAATCAATGGCTTGTGTTTTATAGACTTGATCAAATGACTCTAAATGGAACAGGAACTATTGAAGGCAATGGAGAACAATGGTGGGATCTTCCTTGCAAACCTCACAGGGGTCCTAATGGAAACTCTATATCAGGACCATGTGAGAGCCCTACGATGATAAGGTTCTTCATGAGCTCAAATTTGGTGCTAAGTGGGTTGAAAATACAAAATAGTCCTCAATTCCATGTGAAATTTGATGGTTGTGAAGGAGTACTCATCGATAAATTGTCCATTTCTGCACCTAAACTTAGTCCCAATACTGATGGGATCCACTTAGGAAACACAAGGGATGTTGGAATTTATAATTCCTTGATAAGCAATGGTGATGACTGCATTTCAATTGGTCCTGGGTGCTCAGATGTGAATGTGGAGGGTGTTACTTGTGCTCCTACCCACGGAATTAGCATTGGAAGCCTAGGAGTACACAATTCCCGTGCATGTGTCTCAAACTTAACAGTTCGCAATTCAATCATAAAAGAATCAGACAATGGACTAAGGATCAAGACATGGCAGGGTGGAACAGGCTCAGTAACAGACTTAACATTTGAGAACATCCAAATGGAGAATGTCAGAAACTGCATCATCATAGACCAATACTATTGTTTATCAAAAGAGTGTACAAATCAAACATCAGCTGTATATGTAAACAATGTGTCCTACAAAAACATAAAGGGTACTTATGATGTTAGAACACCTCCTATACACTTTGCTTGTAGTGATAGTGTTGCTTGCACCAACATAACACTCTCTGATGTTGAGCTTTTGCCTTATGAAGGGGCATTGTTAGATGACCCTTTTTGTTGGAATGCTTATGGAAGACAAGAGACTATGACTATACCTCCACTTGATTGTTTGAGAGAAGGTGAACCCGAGACAGTTGTCGAGTCCTCTGAATACGAATGCGCTTGA 1671 0.3848 MLKCFHIKIFTLLYKTPFIIHIFCNGSYRHHTHILSTALDYYGIELREIQEITNKKIYPHSSLFIRYISSLKQTCDSTLLQKKLMMSLIHRFFILWIITMTLLIHNLSNVEGRYHHHKKQKKISPAPSEPSPPIQSPTPPSVPSDPYPNDPGESPSSECIFDVRSFGAVGDGEADDTAAFRAAWKAACSVDSGVLFAPQNYCFKITSTIFSGPCKPGLVFQIDGTLMAPDGPDCWPEKDSRNQWLVFYRLDQMTLNGTGTIEGNGEQWWDLPCKPHRGPNGNSISGPCESPTMIRFFMSSNLVLSGLKIQNSPQFHVKFDGCEGVLIDKLSISAPKLSPNTDGIHLGNTRDVGIYNSLISNGDDCISIGPGCSDVNVEGVTCAPTHGISIGSLGVHNSRACVSNLTVRNSIIKESDNGLRIKTWQGGTGSVTDLTFENIQMENVRNCIIIDQYYCLSKECTNQTSAVYVNNVSYKNIKGTYDVRTPPIHFACSDSVACTNITLSDVELLPYEGALLDDPFCWNAYGRQETMTIPPLDCLREGEPETVVESSEYECA 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00901 556 SMART pbh1 322 348 IPR006626 -
Car01g00901 556 SMART pbh1 402 423 IPR006626 -
Car01g00901 556 SMART pbh1 431 452 IPR006626 -
Car01g00901 556 SMART pbh1 349 370 IPR006626 -
Car01g00901 556 SMART pbh1 372 392 IPR006626 -
Car01g00901 556 Gene3D - 149 551 IPR012334 -
Car01g00901 556 Pfam Glycosyl hydrolases family 28 202 508 IPR000743 GO:0004650|GO:0005975
Car01g00901 556 MobiDBLite consensus disorder prediction 118 155 - -
Car01g00901 556 PANTHER - 91 546 - -
Car01g00901 556 PANTHER POLYGALACTURONASE PLANT-LIKE PROTEIN 91 546 - -
Car01g00901 556 MobiDBLite consensus disorder prediction 126 150 - -
Car01g00901 556 SUPERFAMILY Pectin lyase-like 159 553 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00901 Car-Chr1 8137763 8145487 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00901 86 555 Glycoside Hydrolase AT1G48100 67.360 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00901 - - gmx:100785528 815.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00901 01 8137763 8145487 Car01g00901 01 8137763 8145487 ECH
Car01g00901 01 8137763 8145487 Car04g00694 04 6797768 6800456 ECH