Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00898 ATGACAACAACTGAGGCAGCTTCTGCTGGGCTTGGTCCTAGATATGCACCCGATGATCCGTCACTTCCGACGCCGTGGAAGGGGTTGATTGATGGAAGTACTGGTTTGTTATACTATTGGAATCCTGATACCAATGTTACTCAATATGATAAGCCGCCTCCCTTGGCACCACCTGAGCCTGCTGCTTCTGCGCCGAGTTTAGCGCCTATACCGGTTGCTCATCCGATGACACCTGCTGGAGTGGTGCAACAGCATGGGCAACAGATGATGCAAGTGCATTCCTCACAACAACAGCAGGGGAGTCACTTTGCTCAACAGCATGGACAACCGATGCCACAGCAGCAGAGTCCTCATTTGGTACAGGCAACTCAGCAGCAGTCTTCTCAGGTTGTGCCACAGCAGCAGAACTCACAGGTTGCACAACCGGCTTCGCAACCTGGGTTACACCAAGCTAGACCGCAGATGGTGCAGCCTCAGGGGCAGCAAATGATGCAGTATCAAGGACAGCAATTTCAGCAAATGCATCATCAGATCCCTCAGCAGGTGATTCGTCCACAACAATTTGGGCAAGGAAATTCGCAGGATCACGGCTCGCATCTTGTGCAACCGCAAGCGCCTCAGTTCACTCCCCAGAACATGCATTATATGGGATATCAGCAAAATATGATTGCGCCCAGGCAACCTAACTCCCAGCAGATTCAGCCAAACATGCTCCCATCTGGGCAACCAAACTCCCAGCAGAATCAGCATAACATACATAACCAGCATTTTGAAAATCAACAAGATTTTAAAACAGCGGTGCCAAAGGTGGATGATATAGAATTTAAAAGTGGAAACCAAGTAGGGTTCTCACCATCGCAGTATCAACAAAGAAGTGCCTTGCCTGTTCAAAACAACCAGAACGTTCATGCTGAAGTTAGTTCTGGTCAAGTGCCTAATCCCGGTGTTAATGCTGGCCAACCACAACAATACAGGGGCTTTTCAGGCCACATACAACAGCCTTCCCCGACAATGCAGTCACAGCAGGGTGGTTCTGATTCATTTTACCAACATGGTCCTAACTTCCAAAACCAGATGAGCCCCAGAATGATGCATGGTCATCCATCCAATGTGCACCCTATTCCCCAAAAGATGGGACACGAGGACAATGTACATGGTAGACCTGGTAATGACTATTACTATAATTCTAACAAAGAGATGCCGCCAATGGGTCGTCAGCAGCCTGATATGACCCAGATGTCGATTTCCCGAAATCAGCAGGATATGAGGATTGGCAATGCCCCTTTTCAAAATAATCTGCCAAGTGGAAATGGAAGTGGTATTACTGGGAATGCTATGAATAACATGTTCACTCCTCCATTAGGAGGACCTTCTGCTCTTTCAAGTAACTCTTTCACGAGGCCTCCTTATGGTGGATCTTCAGATGTTACTGATCTCTCAGCAGTTGAAATGTACTGTCAGCAACATGAAGTTACAGCAACGGGTGACAACATTCCACCTCCTTTCATGACATTTGATGCTACCGGGTTCCCTCCAGAGATATTGAGAGAGATTTTTTCTGCGGGCTTTTCGAATCCAACACCAATTCAGGCTCAAACATGGCCTATTGCCATACAGGGTAGAGACATAGTGGCAATTGCCAAAACAGGCTCTGGGAAAACACTAGGCTACTTAATGCCAGCCTTCAGTCTTCTTAGGCAGCGGCATAATAATTCTCTGAATGGCCCCACCGTCTTGGTTTTGGCTCCAACGCGTGAACTTGCAACACAGATCCAAGAGGAGGTCTTCAAATTTGGACGGTCTTCAAGAGTATCTTGCACGTGCTTGTATGGTGGAGCGCCTAAAGCCCTTCAGTTAAAAGAATTGGATCGGGGAGCAGACATTGTTGTTGCCACACCTGGCAGGCTCAATGATATACTTGAAATGAAAAAAATTGACTTTAGGCAAGTTTCACTCCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGATTTGAGCCTCAAATCCGCAAGATTGTGAATGAGATTCCTCCACGTAGACAAACGCTCATGTACACTGCTACCTGGCCAAAAGAAGTACGAAAAATTGCTGGCGATCTTCTTGTTAATCCTGTTCAGGTTAACATTGGAAATGTAGACGAGCTTGCTGCAAATAAATCCATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAACAGAGGCGTTTAGAGCAAATCCTCCGATCCCAGGAGCGAGGTTCTAAGATCATAATATTTTGTTCCACAAAAAAGTTGTGTGATCAACTTGCCCGCACTATTGGCCGAACTTTTGGAGCAGCTGCAATTCATGGAGACAAGTCTCAAGGTGAGAGAGACTGGGTTTTAGGTCAGTTCCGGACTGGGAAGTCTCCAATTTTGGTTGCCACTGACGTTGCTGCCCGTGGTCTTGATATTAAGGATATAAGGGTGGTGATCAACTATGATTTCCCCACTGGTGTTGAGGACTATGTCCACCGAATTGGAAGAACAGGAAGGGCAGGTGCTACTGGAGTGGCATATACCTTTTTCTCTGAGCAGGATTGGAAACATGCTGGTGATTTGATCAAAGTTTTGGAGGGTGCTAACCAGCATGTGCTTCCGGAGTTAAGACAGATTGCTTCACGGGGACCACCAAACTTTGGAAGGGATAGGGGCGGGATAAGTCGGTTTGACTCtggtggtggtggtgttggggggcgctgggacaatggtgcccgtgggggcatgagggacggtggtggctttggtggtcgtgggggCTTCGGCGTGAGGGACGGTGGTCGTGTTGGCATGAGTGGCGCACAAGGTGGAAGAGGTGATTCCAATCCTGGTAGGATGGGCAGCAGGGGTCGAGGATTTAGTGGTCCTCCTCGTGGGGGTCAGGTTGGTTGGGGCAGGGGTGATCGCGGTGCTCCTAGTGATCGGTTCAACGGACAAGGGCGTGGACGTGGACGATTTGATAACAGAAGAGATGTTTCCAGAAATAGAGGCAGAAGTTACAGTCGTAGCCCTGAAAGAGTTCGAACATgggatattaacagaagcagcagcagaagtagaagtaggagctggagcaggggtcgcagtagaagtcgcagctggtctcggggtcgcagtcgcagctatagtcgtagtcgtagtccacgtcggagtcgtagccgtgatcgaagttatagccggagccgcagccccaAGAATGAAAGACGTGTTAGGACGTCAAAATTTTCTGATAAGAGCGATTTTGTGGCACCTGAAGCAGGAGCTTCTGATCCTAAAATGTTCCCTAAATCTGCCAGTAACCAAGATAATTCTGTTTTGGGAACAGAACATGTTGAGCAGCTACCTGTTGTTGGGAGCACTGGCCCAAATAATCCAGAGGCTGTAGTGGACGTTAGTCATCAACCAGCTTCTGATATTTGA 3444 0.4399 MTTTEAASAGLGPRYAPDDPSLPTPWKGLIDGSTGLLYYWNPDTNVTQYDKPPPLAPPEPAASAPSLAPIPVAHPMTPAGVVQQHGQQMMQVHSSQQQQGSHFAQQHGQPMPQQQSPHLVQATQQQSSQVVPQQQNSQVAQPASQPGLHQARPQMVQPQGQQMMQYQGQQFQQMHHQIPQQVIRPQQFGQGNSQDHGSHLVQPQAPQFTPQNMHYMGYQQNMIAPRQPNSQQIQPNMLPSGQPNSQQNQHNIHNQHFENQQDFKTAVPKVDDIEFKSGNQVGFSPSQYQQRSALPVQNNQNVHAEVSSGQVPNPGVNAGQPQQYRGFSGHIQQPSPTMQSQQGGSDSFYQHGPNFQNQMSPRMMHGHPSNVHPIPQKMGHEDNVHGRPGNDYYYNSNKEMPPMGRQQPDMTQMSISRNQQDMRIGNAPFQNNLPSGNGSGITGNAMNNMFTPPLGGPSALSSNSFTRPPYGGSSDVTDLSAVEMYCQQHEVTATGDNIPPPFMTFDATGFPPEILREIFSAGFSNPTPIQAQTWPIAIQGRDIVAIAKTGSGKTLGYLMPAFSLLRQRHNNSLNGPTVLVLAPTRELATQIQEEVFKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGNVDELAANKSITQYVEVVPQMEKQRRLEQILRSQERGSKIIIFCSTKKLCDQLARTIGRTFGAAAIHGDKSQGERDWVLGQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQIASRGPPNFGRDRGGISRFDSGGGGVGGRWDNGARGGMRDGGGFGGRGGFGVRDGGRVGMSGAQGGRGDSNPGRMGSRGRGFSGPPRGGQVGWGRGDRGAPSDRFNGQGRGRGRFDNRRDVSRNRGRSYSRSPERVRTWDINRSSSRSRSRSWSRGRSRSRSWSRGRSRSYSRSRSPRRSRSRDRSYSRSRSPKNERRVRTSKFSDKSDFVAPEAGASDPKMFPKSASNQDNSVLGTEHVEQLPVVGSTGPNNPEAVVDVSHQPASDI 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00898 1147 Gene3D - 713 883 IPR027417 -
Car01g00898 1147 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 654 662 IPR000629 -
Car01g00898 1147 MobiDBLite consensus disorder prediction 1029 1059 - -
Car01g00898 1147 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 297 975 - -
Car01g00898 1147 Gene3D - 477 712 IPR027417 -
Car01g00898 1147 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 737 881 IPR001650 -
Car01g00898 1147 MobiDBLite consensus disorder prediction 1 28 - -
Car01g00898 1147 MobiDBLite consensus disorder prediction 306 364 - -
Car01g00898 1147 MobiDBLite consensus disorder prediction 1102 1116 - -
Car01g00898 1147 MobiDBLite consensus disorder prediction 881 1147 - -
Car01g00898 1147 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Car01g00898 1147 Pfam DEAD/DEAH box helicase 527 697 IPR011545 GO:0003676|GO:0005524
Car01g00898 1147 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 534 708 IPR014001 -
Car01g00898 1147 MobiDBLite consensus disorder prediction 81 165 - -
Car01g00898 1147 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 297 975 - -
Car01g00898 1147 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 503 531 IPR014014 GO:0003724
Car01g00898 1147 SMART ultradead3 522 725 IPR014001 -
Car01g00898 1147 SMART ww_5 21 54 IPR001202 GO:0005515
Car01g00898 1147 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Car01g00898 1147 MobiDBLite consensus disorder prediction 988 1023 - -
Car01g00898 1147 SMART helicmild6 762 842 IPR001650 -
Car01g00898 1147 MobiDBLite consensus disorder prediction 229 249 - -
Car01g00898 1147 CDD SF2_C_DEAD 722 851 - -
Car01g00898 1147 MobiDBLite consensus disorder prediction 49 165 - -
Car01g00898 1147 MobiDBLite consensus disorder prediction 306 393 - -
Car01g00898 1147 Pfam Helicase conserved C-terminal domain 734 842 IPR001650 -
Car01g00898 1147 MobiDBLite consensus disorder prediction 51 65 - -
Car01g00898 1147 SUPERFAMILY WW domain 14 53 IPR036020 GO:0005515
Car01g00898 1147 MobiDBLite consensus disorder prediction 1060 1086 - -
Car01g00898 1147 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 857 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00898 Car-Chr1 8108345 8114089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00898 491 862 Eukaryotic Initiation Factors Gene Family AT3G19760 34.853 7.28e-66 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00898 K12823 - gmx:100807830 1435.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00898 01 8108345 8114089 Car01g00898 01 8108345 8114089 ECH