LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car01g00894	ATGGCAAGAAAATGCGAAGGACGTGGTGTGGGAATAGACCTTGGAACAACGTATTCATGTGTTGCAGTATGGCAAGAGCAACATTGTAGAGTTGAGATCATTCACAATGACCAAGATgctaagaggttaattggtaggaagtttagtgattctattgttcaagttgataccaagttgtggccatttaagatgcgagaaATTGCCGAGGCGTATTTAGAATCACCTGTTAAGAATGCAGTTGTTACTGTACCTGCTTATTTCAATGATTCTCAGCGAAAAGCCACTATAGATGCTGGTGCTATTGCTGGCCTTAATGTGATGAGGATAATGAATGAACCTACTGCTGCAGCTGTTGCATATGGAATTGACAAGAGAGCTGATTGTGTTGGAGAAAGGAATATTTTTGTTTTTGATCTTGGTGGTGGAACTTTTGATGTGTCTCTCCTAACAATTAAGGACATGGTCTTCCAAGTTAAGGCCACTTCCGGAAACACTCACCTTGGTGGAGAGGATTTTGATAATAGAATGGTCACCTACTTTGTGCAAGAGTTCAAGAGAGAAGAAATTGGACATTAG	576	0.3524	MARKCEGRGVGIDLGTTYSCVAVWQEQHCRVEIIHNDQDAKRLIGRKFSDSIVQVDTKLWPFKMREIAEAYLESPVKNAVVTVPAYFNDSQRKATIDAGAIAGLNVMRIMNEPTAAAVAYGIDKRADCVGERNIFVFDLGGGTFDVSLLTIKDMVFQVKATSGNTHLGGEDFDNRMVTYFVQEFKREEIGH	191

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car01g00894	191	PANTHER	HEAT SHOCK 70 KDA PROTEIN	63	188	-	-
	Car01g00894	191	ProSitePatterns	Heat shock hsp70 proteins family signature 1.	12	19	IPR018181	-
	Car01g00894	191	Gene3D	-	134	190	-	-
	Car01g00894	191	PANTHER	HEAT SHOCK PROTEIN 70KDA	40	64	IPR013126	GO:0005524\|GO:0140662
	Car01g00894	191	ProSitePatterns	Heat shock hsp70 proteins family signature 2.	136	149	IPR018181	-
	Car01g00894	191	PANTHER	HEAT SHOCK PROTEIN 70KDA	63	188	IPR013126	GO:0005524\|GO:0140662
	Car01g00894	191	PANTHER	HEAT SHOCK 70 KDA PROTEIN	4	40	-	-
	Car01g00894	191	PANTHER	HEAT SHOCK PROTEIN 70KDA	4	40	IPR013126	GO:0005524\|GO:0140662
	Car01g00894	191	SUPERFAMILY	Actin-like ATPase domain	10	124	IPR043129	-
	Car01g00894	191	PANTHER	HEAT SHOCK 70 KDA PROTEIN	40	64	-	-
	Car01g00894	191	Gene3D	-	2	133	-	-
	Car01g00894	191	SUPERFAMILY	Actin-like ATPase domain	131	187	IPR043129	-
	Car01g00894	191	Pfam	Hsp70 protein	63	188	IPR013126	GO:0005524\|GO:0140662
	Car01g00894	191	Pfam	Hsp70 protein	10	38	IPR013126	GO:0005524\|GO:0140662

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car01g00894	Car-Chr1	8063585	8064387	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car01g00894	1	187	Calmodulin-binding Proteins	AT5G02500	56.641	5.80e-90	271

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car01g00894	K03283		-	gmx:102667578	303.908