Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00883 ATGGGTGCTCCTAAGCAGAAATGGACATCAGAAGAGGAAGCAGCGCTTAAAGCTGGAGTTGTCAAACACGGTGTGGGTAAATGGCGTACGATACTCAAGGATCCTGAGTTTAACTGTGTCTTATATTTGCGTTCAAATGTCGATCTCAAGGATAAATGGAGAAATTTGAGTGTGATGGCAAACGGATGGACCTCGAGGGAGAAGTCTAAGTTAGCAATCAAAAGGGTGCATTATCAGACACCAAAACAGGATGATAACTCAATGGATACCACTCTTGTTGCTCCAAGTGATGAAGACATTGCTGATGTTAAGCCTCTTCATGTTTCAAGGGATATGTTGCAGATTACTGGTCCCAAAAGGTCTATTGTAAGATTGGATAACCTTATAATGGAAGCAATATCTAGCCTGAATGAGCACGGTGGTTCTAATAAAACAACTATTGCATCTTTCATTGAGGACCAATACTGGGCACCGACAGACTTCAAAAAGTTGTTGTCAGCGAAATTGAAGTATCTTACATCTAGTGGAAAACTGATCAAGGTGAAACGCAGGTATAGGATTGCACCTACCCGAGCATATTCAGACAGAGGAAGATACCCATCCATGTTAATGTTGGAAGGGAGGCATAAAGCCTCGATGAAAGTTGACAAGGATGAGACCAATATCCCTACAAAGTCTCAGATAGATTATGAATTAGCAAAGATAAGGTCCATGACTGCACAAGAGGCAGCTGCAGTTGCTGCTCGAGCAGTTGCTGAAGCGGAAGCTGCCATCGCTGAAGCTGAAGAGGCAGCAAAGGAGGCAGAGGCCGCAGAAGCGGATGCTGAGGCAGCACAAGCTTTTGCTGAAGCTGCAATAAAAACAATGAAGGGGAGAACCACCCCAAAGATGATGATCCATACTTGA 906 0.4393 MGAPKQKWTSEEEAALKAGVVKHGVGKWRTILKDPEFNCVLYLRSNVDLKDKWRNLSVMANGWTSREKSKLAIKRVHYQTPKQDDNSMDTTLVAPSDEDIADVKPLHVSRDMLQITGPKRSIVRLDNLIMEAISSLNEHGGSNKTTIASFIEDQYWAPTDFKKLLSAKLKYLTSSGKLIKVKRRYRIAPTRAYSDRGRYPSMLMLEGRHKASMKVDKDETNIPTKSQIDYELAKIRSMTAQEAAAVAARAVAEAEAAIAEAEEAAKEAEAAEADAEAAQAFAEAAIKTMKGRTTPKMMIHT 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00883 301 Pfam linker histone H1 and H5 family 126 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car01g00883 301 SMART h15plus2 119 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car01g00883 301 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Car01g00883 301 Gene3D - 2 59 - -
Car01g00883 301 SMART sant 4 59 IPR001005 -
Car01g00883 301 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Car01g00883 301 SUPERFAMILY "Winged helix" DNA-binding domain 118 197 IPR036390 -
Car01g00883 301 Gene3D - 119 196 IPR036388 -
Car01g00883 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Car01g00883 301 PANTHER SINGLE MYB HISTONE 4 1 298 IPR044597 GO:0003691
Car01g00883 301 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 298 - -
Car01g00883 301 SUPERFAMILY Homeodomain-like 2 72 IPR009057 -
Car01g00883 301 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 121 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car01g00883 301 CDD SANT_TRF 6 56 - -
Car01g00883 301 Coils Coil 244 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00883 Car-Chr1 7935332 7940088 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00883 1 299 Single Myb Histone (SMH) Gene Family AT1G49950 64.145 1.02e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Car01g00883 Linker_histone 1.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00883 K09422 - gmx:778173 379.407