Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00860 ATGGACTTACCAACGAGAGATGTGTCTGATGATGATGATGAACAAGAGATGAATCAGAGCTCAGACACTGGAAAAAGACTTCGTCATTCTCCCAATCAAATATTAAGGCTGCAAGAAACATTCAATGTTCTTCCACGTCCTGATAAGAAGCAAAGACTTGAATTAGCCAATGAGCTCGGGCTTGAGCCAAAACAAGTAAAGTTTTGGTTCCAAAACAGAAGAATTAAAATAAAGAGTCTACATGAGAAAGCAGTTAACTCTGCTCTTCGGGCTGAAAATGAAAAGATATTGAATGAGATAATGGAAATGAAGGAGGCAATGAAAAATATATTTTGCCAATCATGTAAACCTAACGTAGAGCATGAACAATGTTTGAATCGACTTCGGCTTGAAAATGCACTTCTCAAAGAAAAGAGGTTGATAAAATTTGTTCCAATAGAAAAAGAGAAACTATCGCTAGAGTTGAAGAAAGAGCCTCCCACAAAAACATCACCACTTGGAGATTTTCTAAAGTTAGGAGTGAGTGAAAGTGGTTCCTTGAATCTAATTGTTGGTTCAAGTTCAAAAAGTTCTTTAGGTTCACAAGAAAACGTGTTGTCCAAGAAACCAAGCAATGGAATAGAAATGGAAACATCAAGGATGTTGGAGGTTGGAATTGCTGCCAAGGATGAATTGCTTAAGCTTTTGCGCACCAATGAGCCCTTTTGGGTCAAGTCTCAAGTTGATCGAAGACTTGTTCTTCACCAACAAAACTATGAAAATATTTTTTCTAGGGTTGATCATTTCGATGGTGCCGATGTTCGTATTGAATCATCAAAAGATTCACGAATAGTGAAATTCAAAGCACTGGATTTGATTGACATGTTTTTAGATTCGGAAAAATGGACAAATCTTTTCCCAATTATTGTTAGCAAAGGGGAGACAATCAAAGTGCTTGAAAGTGGCTCCCCAAAAAATCGAAATGGAGCATTGTTGTTGATGCATGGAGAGATGCACGTTCTTTCACCGCTAGTTCCTTGTAGGGAGTTTTACTTCCTTCGTTTTTGTGCACAAGTGGAAGCTAATATTTGGGTTATAGCTGACGTGTCATATGATTACTTGAAAGAGAATGGACCTCATTCTTCCACTTGGAGATTTCCTTCTGGATGTATCATTCACCAAATTTCTAGTGGGACTTCACAGGTTTCATGGATCGAACATGTTGAAGTGGGTGCGAATGTTGAAGTGCACTCTATTTACAGAGATATTGTGAATGGAGCTATTGCATTTGGTGCTTCAAGATGGCTTATGGAACTGCAACGAATGGGAGAAAGACTTACTAGAGCCTCACTTGAATCCATAGCTTCTTATGACAAAGGAGTGATTACTTCACCTGAAGGGAGGAGAAGGGTAATGCAGCTTGCAAATGAGGTTGTTAAAGACTTCAGTCAAATTTTAGCAATGTCAAGTAAGCTGGATAATATTCCAAAATACTTCATTGATGCTGATGATAGTGGAGTTAGGTTCTGTCTTCGAAATAACACAAACTCATCCATTGTCATCGTTGCTAGCTCCATTTCGTTACCTATCCCATCTCATATTGTCTTTAATTTCCTCAAAGATCCTGCAAGACGTTTTCAGTGGGATGTGATTTGTAATGGAAAGCCATGGCAAGAGGTTGCACACATCTCCACTGGGACACATCCAAACAACTATGTATCAATTATTGAGCCTATGGAACCTCGTTGCGAAGATAGTGTGGTGATAATGCAAGAATGTTTCATAGAGCCATTGGGATCATATGTTGTGTTTTCTCCTGTTAACGTACCACAATTGAAGATGTTTCTGGATGGCCATGATTCATCAATGGTGTCACTTATTCCATCAGGCTTTTTTATCTCTGAAGAGAGTCATTCTCTTTTGAATGATGAAACAACTTCAAGTGGCAGCAATGGAAACGGTGGTGTAAAAACTAGAGGCTCACTACTAACTGTGGCTCTCCAAATTCTTATGCATGGTGAAATTATGAGTTTGGAATCTGTTGCTGATGCTTCCAACACACTCATCACAACAACATTAAACAACATAAAGCGTGCTTTGCTCTTTGATTCTCAAATTTGA 2100 0.3862 MDLPTRDVSDDDDEQEMNQSSDTGKRLRHSPNQILRLQETFNVLPRPDKKQRLELANELGLEPKQVKFWFQNRRIKIKSLHEKAVNSALRAENEKILNEIMEMKEAMKNIFCQSCKPNVEHEQCLNRLRLENALLKEKRLIKFVPIEKEKLSLELKKEPPTKTSPLGDFLKLGVSESGSLNLIVGSSSKSSLGSQENVLSKKPSNGIEMETSRMLEVGIAAKDELLKLLRTNEPFWVKSQVDRRLVLHQQNYENIFSRVDHFDGADVRIESSKDSRIVKFKALDLIDMFLDSEKWTNLFPIIVSKGETIKVLESGSPKNRNGALLLMHGEMHVLSPLVPCREFYFLRFCAQVEANIWVIADVSYDYLKENGPHSSTWRFPSGCIIHQISSGTSQVSWIEHVEVGANVEVHSIYRDIVNGAIAFGASRWLMELQRMGERLTRASLESIASYDKGVITSPEGRRRVMQLANEVVKDFSQILAMSSKLDNIPKYFIDADDSGVRFCLRNNTNSSIVIVASSISLPIPSHIVFNFLKDPARRFQWDVICNGKPWQEVAHISTGTHPNNYVSIIEPMEPRCEDSVVIMQECFIEPLGSYVVFSPVNVPQLKMFLDGHDSSMVSLIPSGFFISEESHSLLNDETTSSGSNGNGGVKTRGSLLTVALQILMHGEIMSLESVADASNTLITTTLNNIKRALLFDSQI 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00860 699 ProSiteProfiles 'Homeobox' domain profile. 20 80 IPR001356 GO:0003677
Car01g00860 699 SUPERFAMILY Bet v1-like 208 438 - -
Car01g00860 699 CDD START_ArGLABRA2_like 212 437 - -
Car01g00860 699 Coils Coil 118 138 - -
Car01g00860 699 PRINTS Lambda-repressor HTH signature 60 76 IPR000047 GO:0003677
Car01g00860 699 PRINTS Lambda-repressor HTH signature 51 60 IPR000047 GO:0003677
Car01g00860 699 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 18 693 - -
Car01g00860 699 SUPERFAMILY Homeodomain-like 19 83 IPR009057 -
Car01g00860 699 SMART START_1 216 438 IPR002913 GO:0008289
Car01g00860 699 MobiDBLite consensus disorder prediction 1 31 - -
Car01g00860 699 ProSitePatterns 'Homeobox' domain signature. 55 78 IPR017970 GO:0000981|GO:0006355
Car01g00860 699 Gene3D - 220 438 IPR023393 -
Car01g00860 699 Pfam START domain 219 437 IPR002913 GO:0008289
Car01g00860 699 ProSiteProfiles START domain profile. 207 441 IPR002913 GO:0008289
Car01g00860 699 Coils Coil 86 106 - -
Car01g00860 699 Pfam Homeodomain 25 78 IPR001356 GO:0003677
Car01g00860 699 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 18 693 IPR042160 -
Car01g00860 699 SUPERFAMILY Bet v1-like 458 666 - -
Car01g00860 699 MobiDBLite consensus disorder prediction 1 17 - -
Car01g00860 699 SMART HOX_1 22 84 IPR001356 GO:0003677
Car01g00860 699 CDD homeodomain 25 78 IPR001356 GO:0003677
Car01g00860 699 Gene3D - 7 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00860 Car-Chr1 7625483 7631068 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00860 28 693 Homeobox Transcription Factor Family AT1G73360 38.737 3.47e-147 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car01g00860 START 5.5e-31 CL0209