Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00859 ATGGATCACTCAATGGGAGAGATCGGTAGATCTAGGGATGAAGATACTCAAAACTCGCAAAAAGGAAAAATATCATTCAACATAAACCTCAATCCTGCACAAGCAACCATACTCGAAAAGTATTTCATGAGAGAGTGCCAACATCCAAGCGAAGCCCAAAGACAGCAATTAGCTAAGGAGGTTGGGCTTGAGCCCACAAAAATCAAGTTTTGGTTTCAAAACATGAGGACTCAATTGAAGGGCATGCTAAACCATGAGGTTGGTGGAAGTTCAAGTGATGTTGACAACAATGGTAAGCAAATTATGGGAAATTATAATGAAGAAAAGACAATGGTGTCTCAGATTGCAGCTGTTGCAATGGAAGAATTGGTTAGGCTAATTAAGTGCAAGAAAGAGCCTTTATGGATCCATTATCCAACTGCTCATGATGACAAATTCACCCTTCATAAAGAAAATTATCAACAAATTTTCCCCAAAACCAATCATGTCATAGGTACCAATGTTTGTAAAGTATCTTCAAAATATTCAGCAATTGTGAACCTAAGTTGCATGCAACTAGTTGGCATATTTCTAGACTCGGTCAAATGGGCTGACATGTTCCCAACAATTATTACCAAAGCACAAACAACTAAAGTATTTGAAAATGGTTCATTGAGAAATCGAGATGGTGCTTTGCAATTGATGTATGAAGAAATGCACATTTTGTCACCATTAGTTGGACCTCATGAATTTAACATAGTTCGCTATTGTAAACAAGTTGATGTTGGTGTATGGATTATAACAGATGTGTCAATTGCTTCATCTCAACTAAATGCACCCCCCCTTGCATTCTCTTGGAAACATCCATCCGGATGTATGATTCGTGAAATTCATAATGGTGCTTGTGAGGTTACTTGGGTTGAACATGTGGATTTGGATGTTAAGATCCACAAGCACCACCAATTTAGAGATTTTGTTGGGACATATAATTTATGTGGAGCAGAAACATGGATTAAGGAACTTCAAAGAATGTGCAATAGATCTATTAGCTCTGAAGTTGAAAGCATATTTGATAATGAACTTGGAGTGATCCAAACAGTTGAAGGGAGACAAAACGTGATGAATTTTGCTAATAGAATGGTTAAGATGTTTTGTGAATGTTTAACCATGTCAAATCAGATGAAATTCACACAAAAAACTCTGAATGTCATTGGAGGGATTAGACTCTCAATTCGTGAAACTGGTATAGGAGAACCAAATGGTATGGTTATCGTTGCTGCCAGTACCATTTGGCTCCCTCAACCTAGTGACAAAGTTATTGAGTTCCTCACTGATCCTATAAAACGTCCCCAGTGGGATGTTCTTTCTGATGGAGATCCAGTGAATGAGATTGTACATATTTCAAATGGGCTTTATCCTGAAAACTTCACTTCAATTATTCGGCCATTCGACTCTAATGAGACAGGCATGGTGATTCTTCATGAAAGTTTCACATCTCCCTTTGGATCATATCTTGTATATGCTCCAATGGATACAGCATTAATGAATGTGGCCATAAGTGGTGAAGAAGACTTAACACTACTAGAAATTCTTCCATGTGGTTTTGTTGTATCTCCAATTTGCCCCTCAAATGAAGGtaataataataataataataCATCAGGAGCTGGCTCATTACTCACTCTAGCATACCAAATATTTGTTGCTGATCACTATGAAGAAAATGTCAACAATTTGCTGAATGCTCAAAATGTTGATACAATTGTCTCCCTTTTGACCACAACTCTTAAAAGTGTCAAGGATGGTCTCGTGAACTAA 1797 0.374 MDHSMGEIGRSRDEDTQNSQKGKISFNINLNPAQATILEKYFMRECQHPSEAQRQQLAKEVGLEPTKIKFWFQNMRTQLKGMLNHEVGGSSSDVDNNGKQIMGNYNEEKTMVSQIAAVAMEELVRLIKCKKEPLWIHYPTAHDDKFTLHKENYQQIFPKTNHVIGTNVCKVSSKYSAIVNLSCMQLVGIFLDSVKWADMFPTIITKAQTTKVFENGSLRNRDGALQLMYEEMHILSPLVGPHEFNIVRYCKQVDVGVWIITDVSIASSQLNAPPLAFSWKHPSGCMIREIHNGACEVTWVEHVDLDVKIHKHHQFRDFVGTYNLCGAETWIKELQRMCNRSISSEVESIFDNELGVIQTVEGRQNVMNFANRMVKMFCECLTMSNQMKFTQKTLNVIGGIRLSIRETGIGEPNGMVIVAASTIWLPQPSDKVIEFLTDPIKRPQWDVLSDGDPVNEIVHISNGLYPENFTSIIRPFDSNETGMVILHESFTSPFGSYLVYAPMDTALMNVAISGEEDLTLLEILPCGFVVSPICPSNEGNNNNNNTSGAGSLLTLAYQIFVADHYEENVNNLLNAQNVDTIVSLLTTTLKSVKDGLVN 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00859 598 Gene3D - 114 319 IPR023393 -
Car01g00859 598 SMART HOX_1 19 86 IPR001356 GO:0003677
Car01g00859 598 ProSiteProfiles 'Homeobox' domain profile. 30 82 IPR001356 GO:0003677
Car01g00859 598 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 29 596 IPR042160 -
Car01g00859 598 MobiDBLite consensus disorder prediction 1 25 - -
Car01g00859 598 ProSiteProfiles START domain profile. 105 343 IPR002913 GO:0008289
Car01g00859 598 SUPERFAMILY Bet v1-like 361 558 - -
Car01g00859 598 Pfam START domain 117 339 IPR002913 GO:0008289
Car01g00859 598 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Car01g00859 598 Gene3D - 2 81 - -
Car01g00859 598 SUPERFAMILY Bet v1-like 106 338 - -
Car01g00859 598 MobiDBLite consensus disorder prediction 1 19 - -
Car01g00859 598 CDD START_ArGLABRA2_like 109 338 - -
Car01g00859 598 CDD homeodomain 29 80 IPR001356 GO:0003677
Car01g00859 598 SUPERFAMILY Homeodomain-like 19 82 IPR009057 -
Car01g00859 598 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 29 596 - -
Car01g00859 598 SMART START_1 114 340 IPR002913 GO:0008289
Car01g00859 598 Pfam Homeodomain 29 80 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00859 Car-Chr1 7609279 7616387 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00859 34 99 Homeobox Transcription Factor Family AT1G73360 51.515 1.80e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car01g00859 START 6.9e-26 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00859 K09338 - gmx:100795075 452.21