Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00858 ATGGATTATTCAATGGGAGGTGGTAGTGGATCTGGTGATGAAGACATTGATAACTTACAAAATGGAAAAAGATCTTCCTCCTACAAACGTCTTACTTCAGCTCAAACAGCCGTACTTGAAAATTTCATGAAGGAATGCCACCATCCAGATGAGGCCCAACGACGTCAATTAGCTGAGGAGGTTGGGCTTGAGCCCAAACAAATCAAATTTTGGTTCCAAAATAAGAGAACTCTATTGAAGAATCAACACGAGCGAGAAAATAACTCCACTCTACGTGCTGAAAATGAAAGGATTCATAACGAAAACTACCTAATAAGAGAAGCATTGAAGGCTACAATTTGCTCAACTTGTGGGGGTCCACCATTTCCCGAGGAAGAACATGAACGTTTCATGAACCACATGCAAGAGGAAAATGCTAAGCTCAAAGAAGAGTGTGAGAAAGTGTCGAACTTTCTTGCAAGATACATGGAGAAAGAGATATCACTACCTGAATTGGAGCAAGCACTGAATTCAATAGAAGCATTTTCAAGAGACATGGAACCTGAAATATCACTAAATCAAACGGTTGGTGAAAGCTCAAGTCAAGTTAATGGCAATCTAACAATGCATCAAGCTGGTATGTTCTCAACAGGAAACTATGATACAGAAAAGTTAATGATGTCTCAAATTGTAGCTATTGCAATGGAAGAGTTAGTTAGGCTTGTGAGAGTTAATGAACCATTTTGGATTAACTCTTCAACTAATCAAGATGGAAAGTACACTCTTCTAAAAGATAGTTATGAACAAGTTTTTCCCAAGAACAATCACTTTAAAGGTGCCAATGTGTGTGAAGAATCTTCAAAATATTCAGGAATTGTTAACCTTAGTGGCGTGCAACTTGTTGACATGTTTCTCGACACGGTGAAATGGACAAACTTGTTCCCAACAATTGTTACTAAAGCAGAAACTATCAAAGTGTTTGAAACCGGTTCGGTAGGAAATCGGGATGGAGCTTTGTTGTTGATGTATGAGGAAATGCATATTTTATCACCTCTAGTGCGACCTCGTGAATTTCACATTGTTCGTTATTGCAAACAAGTTGATGTTGGAGTTTGGGTGATAACTGATGTGTCATTTGATTCCACCTCTCAACCAAACACTTCCTCTCTTTCTCGCTCTTGGAAACATCCTTCTGGATGCATAATTCGTGAAATGCCTAATGGGGCTTGTCTGGTTACTTGGGTTGAACATGTGGAAGTGGATGATAAGATCCATTCACATCAGCTATATAGAGATCTTGTTAATAGCTTTAGTTTATATGGAGCTGAAAGTTGGATTAAAGAGCTTCAAAGAATGTGTCAGAGATCTGTCAGCTTTTTTCTTGAGAGGATACCTATTCATGAATCTAGAGGAGTGATCCAAACAATTGAAGGGAGAAAGGGAGTAATGAAGTTTGCTCATAGAATGGTTAAGATGTTCTGTGAATGTTTAACAATGACAGGACAATTGGAATTTCAACATTTAAGTTTGGATAGCATTGGTGGTGTTAGAGTATCTGTTAGAAAAACCACTAGCACAGGTCAACCAAATGGCATGGTTGTGGCTGCTGCTACCACCCTCTGGCTTCCTCTATCTGCTGATAAAGTTTTTGAATTCCTCAGAGATCCTACAAAAAGATCTCAGTGGGATGTTCTTTCTTGTGGGAATCCAGTGCATGAGATTGCTCACATTTCAAATGGACTATATCCTGGCAACTGCATTTCAATTATTCAGCCATTCATCCCAAGTGAGAACCACACTTTAATTCTTCAAGAAAGTTTCACATCACCTGTGGGATCATATGTTATATATGCTGCAACTGACACAACATCTATGAATGTGGCCATAAGAGGTGAAGATTCTAAAGAGCTACAAATCCTTCCATCAGGTTTTGTTGTTTGTTCAAAAGGCCAACCAAATGTAACTTTGGAAGAAACATTTAACAATGGAAATAGTAGTGTTGATGGATCAGGTGGCACATTGTTAACTTTGGCTTACCAAATTCTGACTTCTAGCACAAATGGAATTGACAAGCCACTTAATATGGAATCTGTTGCTACTGTCAATACCCTTTTGTCCAATACTATTCTCAAAGTTAAAGAGGCTCTCATGACTTCTACTACTTAG 2145 0.3855 MDYSMGGGSGSGDEDIDNLQNGKRSSSYKRLTSAQTAVLENFMKECHHPDEAQRRQLAEEVGLEPKQIKFWFQNKRTLLKNQHERENNSTLRAENERIHNENYLIREALKATICSTCGGPPFPEEEHERFMNHMQEENAKLKEECEKVSNFLARYMEKEISLPELEQALNSIEAFSRDMEPEISLNQTVGESSSQVNGNLTMHQAGMFSTGNYDTEKLMMSQIVAIAMEELVRLVRVNEPFWINSSTNQDGKYTLLKDSYEQVFPKNNHFKGANVCEESSKYSGIVNLSGVQLVDMFLDTVKWTNLFPTIVTKAETIKVFETGSVGNRDGALLLMYEEMHILSPLVRPREFHIVRYCKQVDVGVWVITDVSFDSTSQPNTSSLSRSWKHPSGCIIREMPNGACLVTWVEHVEVDDKIHSHQLYRDLVNSFSLYGAESWIKELQRMCQRSVSFFLERIPIHESRGVIQTIEGRKGVMKFAHRMVKMFCECLTMTGQLEFQHLSLDSIGGVRVSVRKTTSTGQPNGMVVAAATTLWLPLSADKVFEFLRDPTKRSQWDVLSCGNPVHEIAHISNGLYPGNCISIIQPFIPSENHTLILQESFTSPVGSYVIYAATDTTSMNVAIRGEDSKELQILPSGFVVCSKGQPNVTLEETFNNGNSSVDGSGGTLLTLAYQILTSSTNGIDKPLNMESVATVNTLLSNTILKVKEALMTSTT 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00858 714 Gene3D - 13 99 - -
Car01g00858 714 Coils Coil 124 158 - -
Car01g00858 714 Coils Coil 81 101 - -
Car01g00858 714 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Car01g00858 714 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 20 711 IPR042160 -
Car01g00858 714 CDD START_ArGLABRA2_like 217 447 - -
Car01g00858 714 Pfam START domain 227 448 IPR002913 GO:0008289
Car01g00858 714 CDD homeodomain 30 83 IPR001356 GO:0003677
Car01g00858 714 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Car01g00858 714 Pfam Homeodomain 28 80 IPR001356 GO:0003677
Car01g00858 714 SUPERFAMILY Bet v1-like 216 448 - -
Car01g00858 714 SUPERFAMILY Homeodomain-like 25 87 IPR009057 -
Car01g00858 714 ProSiteProfiles START domain profile. 213 451 IPR002913 GO:0008289
Car01g00858 714 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 20 711 - -
Car01g00858 714 Gene3D - 222 451 IPR023393 -
Car01g00858 714 SMART HOX_1 24 86 IPR001356 GO:0003677
Car01g00858 714 SMART START_1 222 448 IPR002913 GO:0008289
Car01g00858 714 SUPERFAMILY Bet v1-like 471 644 - -
Car01g00858 714 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00858 Car-Chr1 7598278 7605858 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00858 23 714 Homeobox Transcription Factor Family AT1G73360 41.365 8.04e-180 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car01g00858 START 9.2e-36 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00858 K09338 - gmx:100795075 807.364