Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00857 ATGGACGAATCTTTGAGAAACGCGTCTGAAGATGAACAAGAGAATACGAGCTCTGACATAACAAAAGTAGGGCGTAATCGTCATTCTCCCTATCAAATAACTAGACTGGAAGAAATATTCACAAAACTCACACATCCGGATGACAAGCAAAGATGTGAAATAGGCAAAGAGCTCGGGCTTGAAACAAAACAAGTGAAGTTTTGGTTTCAAAACAAAAGAACGCAACAAAAGGTCCAAAACGAGAAAGCAGATACCGTTGCACTTCGCGCGGAGAATGAAAAGATTTCCAATGAGAACAAGCAAATGAGGGAGCAATTGAAGACTATGCTTTGTAGCTCATGTGATGGTAAAAACAATCATGCTGATCATGAAATTGCTATGCAACAACTTCGCCTTGAAAATGCTCGTCTCAAACAAGAGCATGAGAGGATATCAAAATTGATTGCAAGGAACATGGAGAATGATGAAAAACCATCACTTGGAGATAATGTGAGATTAGGGGTTGGTTCAAGTTCAAGAGTTCCTTTAGTTTCAGGCAGAAGATCAGAAATAGAAAAGGCTATGATGTTGGAGACTGGAATTGCTGCTAAGGAAGAGTTGCTTAAGCTTTTGTGCCCCAATATGCCCTTTTGGGTCAAGTCTCAAGTTGATCAAAGACTTGTTCTTCACCAACAAAACTATGAAAGTGTCTTTCCTAAAGTTAATCATTTCAATGGTGCCAAAGCTCGTGTTGAATCATCGAAAGATGCACGAATAGTGAAAATTCAAGCAATGCAATTGGTTGACATGTTTCTGGATTCGGAAAAATGGGCAAATCTTTTCCCAACTATTGTTACAAAAGCGCAAACAATTGAAGTGCTTGAAAGAGGTTCCACAGAAAGTCGAAGTGGAGCTATGCTATTGATGTATGAAGAGATGCACGTTCTTTCACCTTTGGTGGCATTTCGGGAATTTCGCTTCCTTCGCTATTGTGTACAACTTGATCCTAGTACTTGGGTGATAGCTAATGTATCATATGATTTCTTGAAAGAGAATGAATCTCATTCTTCCATTTGGATGTTTCCTTCTGGATGCATAATTCATCAAGTTTCTAGTGATTCTTCACAGGTTTCATGGGTTGAACATGTGGAAGTAGTTGACAAAATTCGAGCACACCCTCTCTATAGAGATCTTGTCCAGAGCAATGTTGCATTTGGAGCAGAAAGATGGGTCTTGGAACTTCAAAGAATGTGTGAAAGAATTTTCACTTTTGAAACTAAACACCTATCTGTTTATGATTGTGGAGTGGTAACATTACCTGAAGCGAAGAGAAGCATTATGCAACTTTCTAATAGAATGGTTAAGGACTTGTGTGGGGTTTTAAGCATGTTAACAAAGCCAGAATTTCCAGAAAACTTCATTGATGCTGATTATAATGGGATTAGACTCTCTGTTAGAAAAAATGGTGGCTTAAACGAACCAAGCAACGTGTCCATCGTTGTTGGTGCTAGCTCTGCGCCATTTCCTCTCCCATCTAAGATTCTTTTTGATTTCTTAAAAGATCCTTCAAGACGCTTTGAGTGGGATGTTATTTGTCATGGAGATCCATGGCACAAGGTTGCACACATCTCAACTGGGAATCATTTCAGCAACTATATATCAATTATTCAGCCAATGGAAGCTCCTCCCCCGGAAGGTGTGGTGATAATTCAAGAATGTTTCATAAATCCATTAGGATCATATGTTGTGTATTCTCCTGTGAACATACCAGAGTTAAACATTGCCTTCAATGGTCAAGATTCATCAACAGTGTCACTTCTTTCATCAGGCTTTGTCATTACTGAAGACAGTCATTCTCTTTTCAATGCTCGAATTAGTAATAGAAATGGTGGAACAAGTGCAAAACCAAGAGGTTCTTTGTTGACAGTGGCTTTTCAAATATTGATGTCTAATGCAGAAGTAGTGAATTTGGAACATGCTGCAGCTGCTGTTAACTCACTCATCAATACAACTGTTGATAACATAAGGGATGCTCTGTTCAAAATCTAG 2028 0.3886 MDESLRNASEDEQENTSSDITKVGRNRHSPYQITRLEEIFTKLTHPDDKQRCEIGKELGLETKQVKFWFQNKRTQQKVQNEKADTVALRAENEKISNENKQMREQLKTMLCSSCDGKNNHADHEIAMQQLRLENARLKQEHERISKLIARNMENDEKPSLGDNVRLGVGSSSRVPLVSGRRSEIEKAMMLETGIAAKEELLKLLCPNMPFWVKSQVDQRLVLHQQNYESVFPKVNHFNGAKARVESSKDARIVKIQAMQLVDMFLDSEKWANLFPTIVTKAQTIEVLERGSTESRSGAMLLMYEEMHVLSPLVAFREFRFLRYCVQLDPSTWVIANVSYDFLKENESHSSIWMFPSGCIIHQVSSDSSQVSWVEHVEVVDKIRAHPLYRDLVQSNVAFGAERWVLELQRMCERIFTFETKHLSVYDCGVVTLPEAKRSIMQLSNRMVKDLCGVLSMLTKPEFPENFIDADYNGIRLSVRKNGGLNEPSNVSIVVGASSAPFPLPSKILFDFLKDPSRRFEWDVICHGDPWHKVAHISTGNHFSNYISIIQPMEAPPPEGVVIIQECFINPLGSYVVYSPVNIPELNIAFNGQDSSTVSLLSSGFVITEDSHSLFNARISNRNGGTSAKPRGSLLTVAFQILMSNAEVVNLEHAAAAVNSLINTTVDNIRDALFKI 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00857 675 CDD START_ArGLABRA2_like 186 412 - -
Car01g00857 675 Gene3D - 219 395 IPR023393 -
Car01g00857 675 SUPERFAMILY Bet v1-like 185 413 - -
Car01g00857 675 SMART HOX_1 21 83 IPR001356 GO:0003677
Car01g00857 675 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 18 672 - -
Car01g00857 675 Gene3D - 5 84 - -
Car01g00857 675 MobiDBLite consensus disorder prediction 1 28 - -
Car01g00857 675 ProSiteProfiles 'Homeobox' domain profile. 19 79 IPR001356 GO:0003677
Car01g00857 675 MobiDBLite consensus disorder prediction 1 18 - -
Car01g00857 675 SUPERFAMILY Bet v1-like 432 642 - -
Car01g00857 675 SUPERFAMILY Homeodomain-like 15 80 IPR009057 -
Car01g00857 675 Coils Coil 78 112 - -
Car01g00857 675 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 18 672 IPR042160 -
Car01g00857 675 Pfam Homeodomain 24 77 IPR001356 GO:0003677
Car01g00857 675 Pfam START domain 195 413 IPR002913 GO:0008289
Car01g00857 675 ProSiteProfiles START domain profile. 182 416 IPR002913 GO:0008289
Car01g00857 675 SMART START_1 191 413 IPR002913 GO:0008289
Car01g00857 675 CDD homeodomain 25 80 IPR001356 GO:0003677
Car01g00857 675 Coils Coil 120 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00857 Car-Chr1 7586109 7592790 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00857 18 672 Homeobox Transcription Factor Family AT1G73360 39.685 2.30e-154 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car01g00857 START 4.7e-32 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00857 K09338 - gmx:100794552 633.639