Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00840 ATGCAGCCGATATCGGCAAATGGAATCTCTCATGCTGGTATTGATACTCAGATTGTTCAGTATGCAGCACATCCACCGCTTGGCACTGGGCATGCTATGGTACCACCTGCTTATCCATATCCAGATCCCTACTACAGAAGCATCTTTGCTCCCTATGATGCACAACCTTATCCGCCACAACCCTACGGTGGACATCCAATGGCCAATCTTCAGTTAATGGGAATTCAGCATGCAGGTGTTCCTTTGCCGACGGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGTATTTTAAGGCGCAGGCAGTCTCGTGCTAAAGCTGAATCAGAAAAGAAAGTTGCAAGGAATCGAAAGCCATACTTGCACGAGTCTCGACATTTGCATGCACTGAAAAGAGCAAGAGGATGCGGAGGAAGGTTTCTGAATTCAAAGAAAAATGAGAATCAACAAGACGAGGTTGCATCAGCTGACAATTCACAGTCCAATATCAATCTCAATTCAGATAGAAATGACCTTGCACCATCAGACAAAACATCTTGA 552 0.4475 MQPISANGISHAGIDTQIVQYAAHPPLGTGHAMVPPAYPYPDPYYRSIFAPYDAQPYPPQPYGGHPMANLQLMGIQHAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESEKKVARNRKPYLHESRHLHALKRARGCGGRFLNSKKNENQQDEVASADNSQSNINLNSDRNDLAPSDKTS 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00840 183 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 165 IPR001289 GO:0003700|GO:0006355
Car01g00840 183 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 3 165 - -
Car01g00840 183 SMART cbf3 86 147 IPR001289 GO:0003700|GO:0006355
Car01g00840 183 PRINTS CCAAT-binding transcription factor subunit B signature 90 112 IPR001289 GO:0003700|GO:0006355
Car01g00840 183 PRINTS CCAAT-binding transcription factor subunit B signature 121 144 IPR001289 GO:0003700|GO:0006355
Car01g00840 183 ProSiteProfiles NF-YA/HAP2 family profile. 87 147 IPR001289 GO:0003700|GO:0006355
Car01g00840 183 MobiDBLite consensus disorder prediction 146 177 - -
Car01g00840 183 Gene3D - 87 148 - -
Car01g00840 183 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 89 144 IPR001289 GO:0003700|GO:0006355
Car01g00840 183 MobiDBLite consensus disorder prediction 104 124 - -
Car01g00840 183 ProSitePatterns NF-YA/HAP2 subunit signature. 92 112 IPR018362 GO:0003677|GO:0016602
Car01g00840 183 MobiDBLite consensus disorder prediction 141 183 - -
Car01g00840 183 MobiDBLite consensus disorder prediction 105 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00840 Car-Chr1 7435828 7442336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00840 18 183 CCAAT-HAP2 Transcription Factor Family AT1G30500 59.036 1.89e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Car01g00840 CBFB_NFYA 2.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00840 K08064 - gmx:100809036 313.538