Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00839 ATGGCACTTTCTATGCATAAAGACTCAAATAATCAAATGGATTCTGGTAAGTATGTGAGGTACACTCCTGAACAAGTTGAAGCTTTGGAGAGAGTGTATTCTGAATGTCCAAAGCCTACTTCTTTGAGAAGACAACAACTCATTAGAGAGTGTCCTATACTTTCTAATATTGAACCTAAACAGATCAAAGTTTGGTTTCAAAATCGAAGGTGTCGTGAGAAGCAAAGAAAAGAAGCTTCTCGTTTGCAAACAGTGAATAGGAAGTTATCTGCAATGAACAAACTGTTGATGGAAGAAAATGACCGTCTGCAGAAGCAAGTTTCTCATTTGGTTTATGAAAATGGATACATGAAGCAACAGATTCATACTGTTTCTGCTGCAACTACCACAGACAATAGCTGTGAGTCTGTGGTAATGAGTGGTCAAAACCAACAGCAAAACCCAACTCAGCATCCTCAAAGGGATGCCAACAACCCAGCTGGTCTTCTGGCAATTGCTGAGGAGACCCTGGCAGAGTTCCTTTCAAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGGATAGCAGCACGAGCCTGCGGCCTTGTGAGTCTAGAGCCCACAAAGGTTGCTGAGATTCTAAAAGATCGACTGTCATGGTATCGTGACTGCCGATGTATTGATGTATTGAGTATTGTCCCTACTGGTGGTGGTGGTACAATAGAGCTCATGTACATGCAGACGTATGCGCCCACAACGTTGGCAGCAGCACGAGACTTTTGGACACTGAGATACACTACTAGTTTGGAAGATGGAAGTCTTGTGATATGCGAGAGATCGTTGAATGCTTCAACTGGCGGTCCAACAGGACCTCCTCAATCAAATTTCGTGAGAGCCGAAATGCTTCCTAGTGGTTTTCTTATTAGGCCATGCGAGGGTGGTGGATCTATTATCCATATTGTTGATCATGTTGATTTAGATGTTTGGAGTGTCCCTGAAGTTTTGAGGCCCCTCTATGAATCTTCAAAAATCTTGGCTCAAAAATTGACTATTGCTGCTTTGCAACACATTAGACAAATAGCCCAAGAATCAAGTGGAGAAATTCAGTATGGTGGCGGGCGCCAACCTGCTGTTTTGAGAACTTTTAGTCAGCGACTTTGCAGGGGTTTTAACGATGCTGTGAATGGATTTGTGGATGATGGTTGGTCATTGCTGGGAAATGATGGGGTGGAAGATGTGACTATAACTGTGAACTCATCTCCAAACAAATTCTTGGGGTCCAATTACAATTCATCGATGTTTCCGTCATTTGGAGGTGGTGTCTTGTGTGCTAAGGCATCAATGCTACTGCAGAATGTTCCTCCGGCTTTGCTGGTTCGATTTTTGAGAGAGCATCGGTCAGAGTGGGCTGATTATGGTGTTGATGCGTACTCTTCTGCTTGTCTCAAGACTAGCCCCTATGCGGTTCCCTGTCCAAGACCTGGCGGCTTCCCCAGCAGCCAGGTCATTTTACCTCTTGCTCATACGATTGAGCACGAAGAGTTTCTTGAGGTAGTTCGTATAGAGGGTCATGCATTTTCCCCGGAAGACGTTGCATTGGCACGTGATATGTATCTTTTGCAGCTATGCAGTGGAATTGATGAAAATTCAATCGGCGCATGTGCACAACTTGTGTTTGCACCTATAGATGAATCCTTTGCGGATGATGCCCTTTTGCTCCCTTCTGGTTTTCGTGTTATTCCCTTGGATCCTAAATCAGATGGTCCAGCTGCAACAAGGACATTGGATTTGGCATCAACACTTGAAGTAGGATCCGGTAATGCCCGTCTATCCGGTGAAGGTGATTTGAATGGATACAACCTTAGGTCGGTCCTTACGATTGCATTTCAATTTACCTTTGAGAATCATATGCGAGACAATGTGGCTGCGATGGCTCGTCAATACGTGCGAAGTGTTGTGGGATCAGTTCAAAGGGTTGCCATGGCAATTGCTCCCTCTCGGCTAGGTACTCAGCTAGGGCCGAAGTCGCTTCCTGGTTCGCCGGAAGCTCACGCTTTAGCACGATGGATCTGTAGAAGCTATCGGATGCACACTGGTTCTGAGCTTTTCAGAACTGAGTCCTCCGCAAGCGATGCAATATTGAAGCAACTTTGGCACCATTCTGATGCAATTTTGTGCTGTTCTGTGAAAACAAATGCATCTCCAATATTCACATTTGCAAACCAAGCTGGACTAGACATGCTTGAAACTACTCTAGTTGCACTTCAAGATATAATGCTTGATAAAGTTCTTGATGAAGCTGGTAGGAAGATTCTTTGTTCTGAGTTCTCTAAGATAATGCAACAGGGTTTTGCATATCTACCAGCAGGGATATGTGTATCAAGTATGAATAGGCCAGTGTCTTATGATCAAGCCATTGCTTGGAAAGTTCTCAATGATGATGATGCCAATCACTGTCTTGCTTTCATGTTCATCAACTGGTCTTTTGTTTGA 2535 0.4442 MALSMHKDSNNQMDSGKYVRYTPEQVEALERVYSECPKPTSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMKQQIHTVSAATTTDNSCESVVMSGQNQQQNPTQHPQRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGIAARACGLVSLEPTKVAEILKDRLSWYRDCRCIDVLSIVPTGGGGTIELMYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLNASTGGPTGPPQSNFVRAEMLPSGFLIRPCEGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKILAQKLTIAALQHIRQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLLGNDGVEDVTITVNSSPNKFLGSNYNSSMFPSFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSSACLKTSPYAVPCPRPGGFPSSQVILPLAHTIEHEEFLEVVRIEGHAFSPEDVALARDMYLLQLCSGIDENSIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKSDGPAATRTLDLASTLEVGSGNARLSGEGDLNGYNLRSVLTIAFQFTFENHMRDNVAAMARQYVRSVVGSVQRVAMAIAPSRLGTQLGPKSLPGSPEAHALARWICRSYRMHTGSELFRTESSASDAILKQLWHHSDAILCCSVKTNASPIFTFANQAGLDMLETTLVALQDIMLDKVLDEAGRKILCSEFSKIMQQGFAYLPAGICVSSMNRPVSYDQAIAWKVLNDDDANHCLAFMFINWSFV 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00839 844 SUPERFAMILY Bet v1-like 165 376 - -
Car01g00839 844 MobiDBLite consensus disorder prediction 136 157 - -
Car01g00839 844 Gene3D - 8 83 - -
Car01g00839 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 844 IPR044830 GO:0003700
Car01g00839 844 Coils Coil 82 106 - -
Car01g00839 844 Pfam MEKHLA domain 699 843 IPR013978 -
Car01g00839 844 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Car01g00839 844 CDD START_ArGLABRA2_like 159 375 - -
Car01g00839 844 Pfam START domain 165 372 IPR002913 GO:0008289
Car01g00839 844 CDD bZIP 69 108 - -
Car01g00839 844 CDD homeodomain 17 77 IPR001356 GO:0003677
Car01g00839 844 Gene3D - 185 376 IPR023393 -
Car01g00839 844 SMART HOX_1 14 80 IPR001356 GO:0003677
Car01g00839 844 MobiDBLite consensus disorder prediction 136 156 - -
Car01g00839 844 SUPERFAMILY Bet v1-like 412 599 - -
Car01g00839 844 SUPERFAMILY Homeodomain-like 16 79 IPR009057 -
Car01g00839 844 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Car01g00839 844 SMART START_1 164 374 IPR002913 GO:0008289
Car01g00839 844 ProSiteProfiles START domain profile. 155 356 IPR002913 GO:0008289
Car01g00839 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 844 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00839 Car-Chr1 7417160 7422717 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00839 1 844 Homeobox Transcription Factor Family AT2G34710 78.363 0.0 1392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car01g00839 START 4e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00839 K09338 - gmx:100779499 1584.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00839 01 7417160 7422717 Car01g00839 01 7417160 7422717 ECH