Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00827 ATGGAGGATTCCGAGGGAGTCCTCAGTTTCGATTTCGAGGGCGGCCTCGACGCTGCTCCTCCCTCCGCCGCCACCGTCTCCGTTCCCGCCCCACCTTCCGGACCCATCGTCCACCCCGATTCCTCCTTACCACCTTCTATTTCTTCCAATGGTGCCGCCGCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAACCCGTCTCCGGCAACATTCCTGGACGACGGAGCTTCCGGCAAACGGTTGTATGGAGAGTGTCGTGAGCAGGATTGTGTTTATAAACACACCAATGAAGATATCAAGGAATGTAACatGTACAAGTTAGGATTTTGTCCTAATGGACCAGATTGTCGATACAGGCATGCAAAATCTCCTGGACCTCCTCCTCCAATAGAAGAAGTCCTTCAAAAGATCCAACATTTATATTCATACAATTTTAACAATTCTCACAAATTTATCCAACAAAGGGGTTCTAGCTATACTCAACAAGTTGAAAAGTCTCAGTTTCCTCAAGGAATTAATTCTGCAAACCAAGGTGTGGCTGGAAAACCGTTAGCTGCCGAGTCAGGAAATGTCCAGCAGCAGCAACAAGTTCAACAGTCTCAGCAGCAAGTCAGCCAGATCCAAACACAAAATCTTGCTAATGGTCAGCCCAATCAAGCCAATCGAACTGCAACCCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAGAGTTGCAATCGTGAAAATTTGGAGTTATCTGTACAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAATCAAAACTAAATGAAGCATTTGACTCGGTGGAAAATGTGATATTGATTTTCTCAGTCAACCGTACTCGACATTTCCAGGGATGTGCAAAGATGACATCAAGAATTGGCGGTTCTGTTGCTGGAGGGAACTGGAAATATGCTCATGGAACGGCACATTACGGGCGGAATTTCTCTGTTAAATGGTTGAAGTTATGTGAACTGTCATTCCACAAAACTCGACATTTGAGAAATCCATACAATGAGAACTTACCAGTGAAGATAAGTAGAGATTGTCAGGAGCTGGAACCCTCTATCGGAGAGCAGTTGGCATCCTTGCTTTATCTTGAGCCGGATAGCGAACTTATGGCTATCTCAATTGCAGCGGAGTCTAAACGAGAAGAAGAGAAAGCAAAGGGAGTAAACCCAGATAATGCAGGAGAAAATCCAGATATTGTCCCATTTGAAGACAATGAAGAGGAGGAAGAGGAAGAAAGTGATGAAGAGGAGGAAAGCTTTGTTCAAGCTGTTGTGCCAGTGGGTCAAGGCAGAGGTAGGGGCAGAGGTATGATGTGGCCTCCTCACATGCCTCTCGGGCGTGGAGCCAGACCCATGCCTGGAATGCAAGGTTTTAACCCTGTAATGATGGGTGATGGATTATCCTATGGGCCTGGTGCCCCCGATGGTTTTGGTATGCCAGATCTTTTTGGCATGGGCCCCCGAGGTTTTGGTCCATATGGTCCTAGGTTCTCTGGTGATTTTGCAGGCCCTCCTGCTGCCATGATGTTCCGAGGACGACCTTCACAACCTGGAATGTTTCCCGGTGGTGGATTTGGGATGATGATGAATCCTGGACGTGGTCCCTTTATGGGGGGAATGGGGGTTCCAGGTCCGAACCCACCAAGAGGTGGTAGGCCACTCAATATGCCTCCAATGTTTCCACCCCCTCCACCCCCACCTCAGAATGTGAACCGCATTGCAAAGAGAGATCAAAGAACAAATGATCGGAATGATAGGTACAGTTCGGGACAAGAGCAAGGTAAGAGTCAAGACATGCTCAGTCAAAGTGGGGGTCCTGACGATGAAATGCAGTATCAGCAAAGTGGGGCTCCTGCAAACAACTTCAGGAATGAAGATAGTGAAAGCGAAGACGAGGCACCAAGGCGGTCAAGACATGGAGAGGGAAAAAAAAGAAAAGGCGAAGCTTAG 2031 0.453 MEDSEGVLSFDFEGGLDAAPPSAATVSVPAPPSGPIVHPDSSLPPSISSNGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPSPATFLDDGASGKRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPIEEVLQKIQHLYSYNFNNSHKFIQQRGSSYTQQVEKSQFPQGINSANQGVAGKPLAAESGNVQQQQQVQQSQQQVSQIQTQNLANGQPNQANRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISIAAESKREEEKAKGVNPDNAGENPDIVPFEDNEEEEEEESDEEEESFVQAVVPVGQGRGRGRGMMWPPHMPLGRGARPMPGMQGFNPVMMGDGLSYGPGAPDGFGMPDLFGMGPRGFGPYGPRFSGDFAGPPAAMMFRGRPSQPGMFPGGGFGMMMNPGRGPFMGGMGVPGPNPPRGGRPLNMPPMFPPPPPPPQNVNRIAKRDQRTNDRNDRYSSGQEQGKSQDMLSQSGGPDDEMQYQQSGAPANNFRNEDSESEDEAPRRSRHGEGKKRKGEA 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00827 676 MobiDBLite consensus disorder prediction 1 52 - -
Car01g00827 676 MobiDBLite consensus disorder prediction 25 39 - -
Car01g00827 676 MobiDBLite consensus disorder prediction 427 446 - -
Car01g00827 676 MobiDBLite consensus disorder prediction 458 479 - -
Car01g00827 676 Coils Coil 211 231 - -
Car01g00827 676 MobiDBLite consensus disorder prediction 651 676 - -
Car01g00827 676 MobiDBLite consensus disorder prediction 573 597 - -
Car01g00827 676 Gene3D ph1033 like domains 231 391 - -
Car01g00827 676 MobiDBLite consensus disorder prediction 534 553 - -
Car01g00827 676 Pfam YT521-B-like domain 332 387 IPR007275 GO:0003723
Car01g00827 676 Pfam YT521-B-like domain 253 315 IPR007275 GO:0003723
Car01g00827 676 ProSiteProfiles YTH domain profile. 253 388 IPR007275 GO:0003723
Car01g00827 676 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45 101 673 - -
Car01g00827 676 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 101 673 IPR045168 -
Car01g00827 676 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Car01g00827 676 MobiDBLite consensus disorder prediction 408 446 - -
Car01g00827 676 Coils Coil 86 86 - -
Car01g00827 676 MobiDBLite consensus disorder prediction 617 650 - -
Car01g00827 676 Gene3D - 100 156 - -
Car01g00827 676 MobiDBLite consensus disorder prediction 563 676 - -
Car01g00827 676 MobiDBLite consensus disorder prediction 602 616 - -
Car01g00827 676 ProSiteProfiles Zinc finger C3H1-type profile. 117 144 IPR000571 GO:0046872
Car01g00827 676 MobiDBLite consensus disorder prediction 177 220 - -
Car01g00827 676 MobiDBLite consensus disorder prediction 177 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00827 Car-Chr1 7232172 7240628 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car01g00827 YTH 3.6e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00827 K14404 - gmx:100802826 932.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00827 01 7232172 7240628 Car01g00827 01 7232172 7240628 ECH