Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00815 ATGGCTAATAATTCATCTGAACCCTCATCATCTTTAAGCTTTACATCATCTTCACCTTTATCAAATGGCTCAATTACTCATAACATATGCTCTTCTAATGCCTCAGATCACTGTCGAAATCTCGAGGTTATTAGTTTGAGTAAGCTTAGCTCTAATTTAGAACAGCTTTTGATTGATTCTGATAATGATTATAGCGATGCCGAAATTGTTGTGGAGGGTATTCTGGTTAGAGTTCATCGATGTGTTTTAGCTTCTAGGAGTAAGTTTTTCCATGAATTGTTCAAGAGAGGTAAAGATAAAGGATCATCAAAGAATGAAGGAAAATTGAAGTATTGTTTGAGTGATTTGTTGCCTTATGGCAAAGTTGGATATGAAGCTTTTATCATATTTTTGAGTTATGTTTATAGTGGTAAACTCAAACCCTCTCCAATGGAGGTTTCTACATGTGTTGATAATGTTTGTGCTCATGATGCTTGTGGACCTGCAATTAACTTTGCTGTGGAGGTGATGTATGCTTCTTCCATTTTTCAAATACCAGAGTTGGTTTCACTTTTTCAGCGACGTCTTCTTAACTTTGTAGGGAAGGCTCTTGTGGAAGATGTCATCCCAATCCTTATGGTTGCTTTCCATTGTCAATTGAGTCAACTTGTTGCACTATGTGTTGACAGGGTGGCACGATCAGACCTCAACCAGATCTCGATCGAGAAAGAGCTACCTTGTGAGCTCTCAGAAAAAGTTAAATTGCTCCGCCGTGACCTTCAGCAACAGGACAGTGAAAACTATGCTCCTGTTGTGGATGCTTTGTCTCTCAAACGAATCACGAGAATACACAAAGCATTGGACTCGGATGATGTCGAGCTTGTTAAACTTCTTTTAAATGAGTCGGACATTACTTTAGACGAAGCCGGTGCTCTCCATTACGCAGCAGCCTACTGCGACCCCAAGGTCGTTTCCGAAGTACTTGGGTTGGGTATGGCTAATGTCAATCTTCGGAATTCTCGAGGGTACACAGTGCTTCACGTTGCTGCCATGCGTAAGGAGCCTTCGATTATAGTATCGCTTCTTACAAATGGGGCTTGTGCATCGGATTTGACATTCGACGGTCAGAGTGCTGTTAGTATTTGTAGGAGGTTGACAAGGCCGAAAGATTATCACCCAAAAACCGAACAAGGGAAAGAAACAAACAAAGACAGGATATGCATTGATGTTCTCCAAAGAGAAATGCGAAGGAATCCTTTGGCTGGAGATCTCTCTGTGTCTTCCCAAACAGTGGCTGATGATCTCCACATGAAGCTTTTGTACCTTGAGAACAGAGTGGCATTTGCAAGATTATTCTTCCCTTTGGAAGCCAAACTAGCTATGGACATTGCACGTGCGGAGACAACATCCGAGTTTGCTGGTCTTTCAACATCTAAAGGTTCAAATGGAAACTTAATGGAGGTTGATCTCAATGAAACTCCCCTAATGCAAAACAAGAGACTTATTTCTAGGATGGAAGCTCTAATGAAAACAGTCGAGATGGGGCATCGATACTTTCCTCATTGCTCCGAAGTGCTCGATAAGTTTATGGAGGATGACCTACCAGACTTGTTTTACCTCGAGAAGGGAACTCAAGAAGAGCAACGAGTGAAGCGAACACGATTCATCGAGCTTAAAGAGGACGTCAATAAGGCTTTCAACAAGGATAAAGCCGAGTTTAGTCACTCTGGAATTtcatcttcatcatcctcatcatcCTTTAGAGAATCTGTACATTACAAGGCTAGAAAATGTGTTATCAAAACTTAA 1788 0.4066 MANNSSEPSSSLSFTSSSPLSNGSITHNICSSNASDHCRNLEVISLSKLSSNLEQLLIDSDNDYSDAEIVVEGILVRVHRCVLASRSKFFHELFKRGKDKGSSKNEGKLKYCLSDLLPYGKVGYEAFIIFLSYVYSGKLKPSPMEVSTCVDNVCAHDACGPAINFAVEVMYASSIFQIPELVSLFQRRLLNFVGKALVEDVIPILMVAFHCQLSQLVALCVDRVARSDLNQISIEKELPCELSEKVKLLRRDLQQQDSENYAPVVDALSLKRITRIHKALDSDDVELVKLLLNESDITLDEAGALHYAAAYCDPKVVSEVLGLGMANVNLRNSRGYTVLHVAAMRKEPSIIVSLLTNGACASDLTFDGQSAVSICRRLTRPKDYHPKTEQGKETNKDRICIDVLQREMRRNPLAGDLSVSSQTVADDLHMKLLYLENRVAFARLFFPLEAKLAMDIARAETTSEFAGLSTSKGSNGNLMEVDLNETPLMQNKRLISRMEALMKTVEMGHRYFPHCSEVLDKFMEDDLPDLFYLEKGTQEEQRVKRTRFIELKEDVNKAFNKDKAEFSHSGISSSSSSSSFRESVHYKARKCVIKT 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00815 595 SMART BTB_4 65 193 IPR000210 GO:0005515
Car01g00815 595 Pfam BTB/POZ domain 62 183 IPR000210 GO:0005515
Car01g00815 595 CDD BTB_POZ_NPR_plant 48 193 - -
Car01g00815 595 ProSiteProfiles Ankyrin repeat region circular profile. 334 359 - -
Car01g00815 595 Pfam NPR1/NIM1 like defence protein C terminal 376 578 IPR021094 -
Car01g00815 595 ProSiteProfiles BTB domain profile. 65 143 IPR000210 GO:0005515
Car01g00815 595 SMART ANK_2a 334 366 IPR002110 GO:0005515
Car01g00815 595 SMART ANK_2a 300 330 IPR002110 GO:0005515
Car01g00815 595 SMART ANK_2a 271 299 IPR002110 GO:0005515
Car01g00815 595 PANTHER REGULATORY PROTEIN NPR3 11 579 - -
Car01g00815 595 SUPERFAMILY POZ domain 51 191 IPR011333 -
Car01g00815 595 MobiDBLite consensus disorder prediction 1 21 - -
Car01g00815 595 Pfam Ankyrin repeats (3 copies) 277 359 IPR002110 GO:0005515
Car01g00815 595 Gene3D - 268 408 IPR036770 -
Car01g00815 595 ProSiteProfiles Ankyrin repeat profile. 334 359 IPR002110 GO:0005515
Car01g00815 595 PANTHER REGULATORY PROTEIN NPR3 11 579 IPR044292 GO:0009862|GO:2000022|GO:2000031
Car01g00815 595 Gene3D Potassium Channel Kv1.1; Chain A 30 225 IPR011333 -
Car01g00815 595 SUPERFAMILY Ankyrin repeat 265 377 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00815 Car-Chr1 7065906 7070120 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Car01g00815 NPR1_like_C 1.5e-94 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00815 K14508 - gmx:100217338 949.118