Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00813 ATGGAAGCCGGTGACAGTTACGGCGGAAGAGGAACTCAGCAACCGACAGAGGAAGTAAGTCTTCAACCAGAATGGAGACGCCGAACTGCCTCATCCGGAAGAGAACAGAACCTTACTCTCCAACCAGAATGGAGGCGAGGGAAACCAATCGCTTCTCCTTCTCCTTCCGGTGCTGGCGACGAAGCTCAAAAGAAGGAAAATGAACAAGAAAACGAAGTTCTCCTTCAACCAGAATGGAGAAGCTCAAAACCTAATGCAAGTAGTGTTTGGGAACCAGAATGGAGACGATCAAGGTCCactgctactactagtactacttctGCATTTCCATGGAATCAAAATTATTCCGTAAGAAAACCTGTTGGATCGAGTTCTGGTAGTGTTCAAAGAGATAGTAGAAACTTTGATCAATCTTGGCGAAATGCTCCACCAAAAGGTTATGCAGTTCCCAAATTGGAAAGACTGCAAATATCGGACGATTTAGCTGCGTCATCTTCTGCACTTGAAAAAAAGGATAAAACTTCGCCTATTCTGAGACCTGACAATGGTGGCACATTAGCGGTTCTTACAAGCACACTCTGTGTCAATCATTTTCCTGTTAAGTTCAATCCAGAGAGTATAATATTTCATTATAATGCTTCTGTCAAACCCAAGTTTTCCTCAAAAGTTGGCCAGCCTCGAAAGTTAACTAATAATGATTTGTCCATGATTAGAGAAAAATTGTTTTCGGATGATCCTGAGAGGTTTCCCTTAGACATGACTGCACATGACGGTGCAAAAAATATCTTTAGTGCGGTGCAGTTACCAGAAGAGACGGTTACTGTGGAGATCTTTGAAGGAGAGGATGAAAAGATCACTTCATATAGTGTTACCATAACACTTCTTAATAAACTTAGACTTCGCAAGTTAATGGACTATCTTTGTGGACATTCACTCTCTCTTCCTAGGGATATTCTACAAGGAATGGATGTGGTGATAAAAGAGAATCCCGCTAGGCGCACAATTTCCGTAGGACGGCACTTCTATCCCACAAATCCTCCTTTGGTAATGAAGGAACTTCGCCCTGGAATAATCGCAGTCGGAGGGTTTCAGCATAGTTTAAAACCTACATCTCAGGGTCTGTCCTTATGTGTTGACTACTCGGTGGTGCCTTTCCGAAAGCAAATGTCAGTCTTGGATTTCTTACATGAGCGCATCGATAACTTTAACTTGGGTGAATTTGAAAAATTCAGGAAATATGTTGAGAAGGTGCTTATTGGATTGAAAGTTAGTGTGACGCACCGAAAATCTAAACAGAAATATATCATTGCAGGATTAACGCCTGCAGTTACAAGGTATGTCACTTTTCCCATTGACTGTACTACGGGCTGGAAACTCTCAAAGGATGTTAGTCTTCTTAGCTTTTTTAATGAAAAATATGACAAGGACATTGTATACAAAGATATTCCTTGTTTAGATTTAGGGAAAGGCAACAAGAAGAACTATGTACCCATGGAATTTTGTGTTATAGCTGAGGGCCAAAGATATCCAAAGGATCGTTTGGATGGTGTTTCTGCAAAGACATTGGAAGCAATGTCACTAGCTCACCCAAGTGAAAGGCAGGGTGCTATACAGAAGATGGTGCGATCGCGTGATGGACCTTGTGGCGGTGATCTTCTTAAGAATTTTGGAATGAGAGTCAACACTACCATGACAACCATTCTAGGACGTGTAATTGGCCCCCCGGAATTGAAGTTGGGTGATCCAAATGGCAAGATTGCCAAGATAACAGTGGATCTAGATAAATGTCATTGGAACCTTGCTGGAAGATCAATGGTGGAAGGTAAACCAGTTGAGTATTGGGGTATTATTGATTTCACCAGCATTGGGCCGTATAGTAAGAAATTAAGACGAAAGGAATTCGTTGAAAAACTTATTGGTAAATACAAAACGTTGGGTATTAATATGCAGGAGCCCATTTGGTATGAAGAATCTTCAATGAAGATACTTGCAAGTTACGACTTGCTATCTGAATTACTTGAAAAAATCAACATTTGTAAAAATAACCAAGGTCGTCTACAATTTCTTCTCTGTGTGATGGCTAATAAGAGTCCAGGTTACAAATACCTCAAGTGGATTTCTGAGACCAAAGTTGGTATAGTGACACAATGTTGTTTGTCTTATAGTGCTAATCAAGGGGATGACAAATTCTATACTTATTTGGCTCTCAAGATCAATGCCAAGCTTGGAGGCAGTAATGTAGAGCTCAATAATAGGCTCCCTTATTTCAAGGGTGACGAACATGTTATGTTTATAGGGGCTGATGTCAATCACCCTGGTTCTCGGGACAACAGGAGTCCATCAATTGTTGCTGTGGTTGCAACCGTTAATTGGCCCGCTGCAAATCGTTACGCAGCACGTGTTTGCCCACAATTCAATCGAAGTGAAAAAATATTAAAATTTGGGGAGGTTTGCGTTGAGCTTGTTGGTTGTTATGAGAGGATGAATGGAGTCAGGCCACAAAGAATTGTTGTTTTTCGTGATGGGGTGAGCGAGTATCAGTTTGACATGGTTCTTAATGAAGAGCTACTAGATTTGAAGAGAGTGTTCCAAAGATTAAATTACTTCCCAACAATTACTCTTATTGTAGCACAAAAAAGACATCAAACTCGATTTTTTCCAAATGGTTGGAAGGATGGATCTTCCAGTGGAAATATTTTACCAGGAACAGTTATTGACACAAAAGTTATACACCCCTTTGAATTTGACTTTTACCTTTGTAGTTACTATGGAAGTCTAGGTACAAGCAAGCCCACTCACTACCATGTTTTATGGGATGAGCACAAGTTTACATCTGATGAATTGCAGAAACTTATATATGAGATGTGCTTCACCTTTGCAAGGTGCACTAAACCTGTGTCTTTAGTCCCTCCTGTGTATTATGCTGACCTTGCTGCTTATAGAGGGAGATTATACCACGAAGCAAGGACTGGGATGCAATCTAAGAAGTCAAGAGCATATTCATCTTCTAAAGATTCATCACCGGTTCCATCAACAGCTTCGTTTGAACAGGGATTTTACAGGTTGCATGCTGACCTGGAAAACATAATGTTCTTCATCTAA 3102 0.4039 MEAGDSYGGRGTQQPTEEVSLQPEWRRRTASSGREQNLTLQPEWRRGKPIASPSPSGAGDEAQKKENEQENEVLLQPEWRSSKPNASSVWEPEWRRSRSTATTSTTSAFPWNQNYSVRKPVGSSSGSVQRDSRNFDQSWRNAPPKGYAVPKLERLQISDDLAASSSALEKKDKTSPILRPDNGGTLAVLTSTLCVNHFPVKFNPESIIFHYNASVKPKFSSKVGQPRKLTNNDLSMIREKLFSDDPERFPLDMTAHDGAKNIFSAVQLPEETVTVEIFEGEDEKITSYSVTITLLNKLRLRKLMDYLCGHSLSLPRDILQGMDVVIKENPARRTISVGRHFYPTNPPLVMKELRPGIIAVGGFQHSLKPTSQGLSLCVDYSVVPFRKQMSVLDFLHERIDNFNLGEFEKFRKYVEKVLIGLKVSVTHRKSKQKYIIAGLTPAVTRYVTFPIDCTTGWKLSKDVSLLSFFNEKYDKDIVYKDIPCLDLGKGNKKNYVPMEFCVIAEGQRYPKDRLDGVSAKTLEAMSLAHPSERQGAIQKMVRSRDGPCGGDLLKNFGMRVNTTMTTILGRVIGPPELKLGDPNGKIAKITVDLDKCHWNLAGRSMVEGKPVEYWGIIDFTSIGPYSKKLRRKEFVEKLIGKYKTLGINMQEPIWYEESSMKILASYDLLSELLEKINICKNNQGRLQFLLCVMANKSPGYKYLKWISETKVGIVTQCCLSYSANQGDDKFYTYLALKINAKLGGSNVELNNRLPYFKGDEHVMFIGADVNHPGSRDNRSPSIVAVVATVNWPAANRYAARVCPQFNRSEKILKFGEVCVELVGCYERMNGVRPQRIVVFRDGVSEYQFDMVLNEELLDLKRVFQRLNYFPTITLIVAQKRHQTRFFPNGWKDGSSSGNILPGTVIDTKVIHPFEFDFYLCSYYGSLGTSKPTHYHVLWDEHKFTSDELQKLIYEMCFTFARCTKPVSLVPPVYYADLAAYRGRLYHEARTGMQSKKSRAYSSSKDSSPVPSTASFEQGFYRLHADLENIMFFI 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00813 1033 Pfam PAZ domain 403 517 IPR003100 GO:0005515
Car01g00813 1033 SMART PAZ_2_a_3 389 522 IPR003100 GO:0005515
Car01g00813 1033 Gene3D - 571 751 - -
Car01g00813 1033 ProSiteProfiles PAZ domain profile. 389 505 IPR003100 GO:0005515
Car01g00813 1033 SUPERFAMILY Ribonuclease H-like 683 987 IPR012337 -
Car01g00813 1033 CDD Piwi_ago-like 553 985 IPR045246 -
Car01g00813 1033 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 66 1032 - -
Car01g00813 1033 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 66 1032 - -
Car01g00813 1033 Pfam N-terminal domain of argonaute 192 326 IPR032474 -
Car01g00813 1033 SUPERFAMILY PAZ domain 384 543 IPR036085 GO:0005515
Car01g00813 1033 MobiDBLite consensus disorder prediction 1 146 - -
Car01g00813 1033 ProSiteProfiles Piwi domain profile. 688 987 IPR003165 GO:0003676
Car01g00813 1033 CDD PAZ_argonaute_like 389 504 - -
Car01g00813 1033 SMART DUF1785_2 335 388 IPR014811 -
Car01g00813 1033 Pfam Argonaute linker 1 domain 336 387 IPR014811 -
Car01g00813 1033 MobiDBLite consensus disorder prediction 74 139 - -
Car01g00813 1033 Gene3D paz domain 384 509 - -
Car01g00813 1033 SMART Piwi_a_2 688 986 IPR003165 GO:0003676
Car01g00813 1033 Pfam Piwi domain 689 983 IPR003165 GO:0003676
Car01g00813 1033 Gene3D - 757 1033 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00813 Car-Chr1 7035695 7040614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00813 156 1032 Eukaryotic Initiation Factors Gene Family AT1G48410 33.545 6.33e-142 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00813 K11593 - gmx:100783571 1574.3