LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car01g00812	ATGGAGGATCAAGATGTTTTAGGTTATAGAACATTTGTTGATGTTGAaagagaggaggaagaagaagaagatgagttttgtagttgttgtgaagatgaaaaagaagatgaagaaagagaagaagaagaatggaaagaaattgaagaaACGGTGGTGGAAGGGTTGAAGGAAGAACTTGATGAATTTTCAGTGAAAATGTTCTTTAAGGGTTTGTCAATAACTGGTGTGGAAAATTCAACATCAGGGTTTTCTGGAATTGGAGTGTTCATGGAAAGATCATCAAGTTTTCCACCTATAAGGGTGCAAAAAAGGCTTGATTTTTATGCTGAGGAGCCTATGGTTGATTACTTGGCACTCATGGATGGTTTGTTAGAAGCTATGCAGAATAAGATCCGTAGGGTTTATGCTTTCACTGATTCTGAGTTGTTGTATAAGATCACATTTGATGAAAATTTGGACATGCCACTTTTAATGGCACTGAGAGAAAGGATTCTGGAACATGCCAATAATTTTGAAACTTTTGATCTGAAGCTTGTACCTAGCATTGATCTTGAGCAGCCAATGCAGTTGGCCAAAGTAGCGATGGGACTCGTCACTTTTCCAGTAAATGGTGAAAGGTTGCTTGAGAATTGTTCTATTTGTTGTGATGACAAGCCGGTGCCGATGATGATCACTTTGAAATGTTCACACACATTTTGTTCACATTGCTTAAGGTCCTATGCCGATAGTAAAGTACAATGTTGTCAAGTCCCTACAAGATGTCCTCAACCAGGATGCAGATACTGTATCTCTGCACCTGAGTGCAAGTCTTTTCTTCCGTTCGCCTCCTTTGAATCTCTGGAAAAGACCCTTACGGAAGCCAATATTGTCGAGTCGGATAGGATTTATTGCCCGTTTCCAAATTGCTCTGTTGTCCTTGATCCCTGTGAATGTTTATTGGCAAATGACGGTTCATCTAGTCAGTCAGACAATTCTTGTATCGAGTGTCCTGTTTGTAAGAGGTTTATTTGTGTGGATTGTGGGGTTCCTTGGCATTCTTCCGTGACCTGTGAAGAATACCAGAGTTTGCCAGAGGAGGAGAGAGATGCTTCCGACATTACATTGCATCGTCTTGCTCAGGATAAAAGGTGGAAACGATGTCAGCAGTGTCGAAGAATGATTGAGCTTACTCAAGGTTGTTACCACATGACATGCTGGTGTGGTCACGAGTTCTGCTATTCTTGTGGTGCGGAATATCGGGAAGGCCAACAAACATGCCAATGTGCATATTGGGATGAAGACAGCTTGACACATTCGCTTCAAGAATCAGAACAATGGGCATGGGAGACTTCCTTGATCATGGACGCGTACTCAGATCAAGAACGATCACAACTCGCACTTATACAACGGTTCCTTGATGGCGGTTTTAGTCTTAGTGACCACAATCCCTACCAATCTCCTCCCCCTCACTGTACAGAATCCTTTGTAGACCCTTTGAAGGATCTTCATCAACTTCCATGGCTAGAGAGATTCGTGTCTGTGATAAGTGACAACTACTATGAAGATTACATGCAATGA	1557	0.395	MEDQDVLGYRTFVDVEREEEEEEDEFCSCCEDEKEDEEREEEEWKEIEETVVEGLKEELDEFSVKMFFKGLSITGVENSTSGFSGIGVFMERSSSFPPIRVQKRLDFYAEEPMVDYLALMDGLLEAMQNKIRRVYAFTDSELLYKITFDENLDMPLLMALRERILEHANNFETFDLKLVPSIDLEQPMQLAKVAMGLVTFPVNGERLLENCSICCDDKPVPMMITLKCSHTFCSHCLRSYADSKVQCCQVPTRCPQPGCRYCISAPECKSFLPFASFESLEKTLTEANIVESDRIYCPFPNCSVVLDPCECLLANDGSSSQSDNSCIECPVCKRFICVDCGVPWHSSVTCEEYQSLPEEERDASDITLHRLAQDKRWKRCQQCRRMIELTQGCYHMTCWCGHEFCYSCGAEYREGQQTCQCAYWDEDSLTHSLQESEQWAWETSLIMDAYSDQERSQLALIQRFLDGGFSLSDHNPYQSPPPHCTESFVDPLKDLHQLPWLERFVSVISDNYYEDYMQ	518

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car01g00812	518	ProSiteProfiles	Zinc finger RING-type profile.	211	255	IPR001841	-
	Car01g00812	518	SMART	ibrneu5	360	419	IPR002867	-
	Car01g00812	518	SMART	ibrneu5	278	350	IPR002867	-
	Car01g00812	518	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	208	291	IPR013083	-
	Car01g00812	518	Gene3D	-	348	464	-	-
	Car01g00812	518	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	21	517	IPR031127	GO:0004842\|GO:0016567
	Car01g00812	518	MobiDBLite	consensus disorder prediction	21	43	-	-
	Car01g00812	518	PANTHER	RBR-TYPE E3 UBIQUITIN TRANSFERASE	21	517	-	-
	Car01g00812	518	Pfam	IBR domain, a half RING-finger domain	289	350	IPR002867	-
	Car01g00812	518	Pfam	IBR domain, a half RING-finger domain	370	419	IPR002867	-
	Car01g00812	518	SUPERFAMILY	RING/U-box	209	287	-	-
	Car01g00812	518	ProSitePatterns	Zinc finger RING-type signature.	228	237	IPR017907	-
	Car01g00812	518	Gene3D	-	64	197	IPR036397	GO:0003676
	Car01g00812	518	ProSiteProfiles	TRIAD supradomain profile.	207	425	IPR044066	-
	Car01g00812	518	Coils	Coil	30	50	-	-
	Car01g00812	518	SUPERFAMILY	RING/U-box	363	427	-	-
	Car01g00812	518	Pfam	Reverse transcriptase-like	81	180	IPR002156	GO:0003676\|GO:0004523

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car01g00812	Car-Chr1	7026155	7031827	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car01g00812	63	410	C3H Transcription Factor Family	AT2G19610	26.257	5.52e-30	120

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car01g00812	-		-	mtr:MTR_2g028870	928.702