Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00805 ATGACCGACGATAAGGACTTGTTGCTAAGCCCTAATCTCGATATCACGATAGACGACGCATCTCCAAACAGTGAGCAACTACTTGAGGTTGTGGATGAGGGCAACGAGCTTGAGAATGACTGTAGTCAATTGTTTGAGATTGATGGAAGCGAACTTGAAAATGGAAGGGATGAAACAATAGTAGTTGGCAGTCATAGTGGAGAATCTCAAGGAAAAGACTGCGCCCCACCTGTTgtgggaatggagtttgaaacttatgatgatgcctataactattataatagctatgccagggaaattggatttgctattcgGGTTAAATCTTCGTGGGCCAAACGTAATAGTAAAGAGAAGCGTGGTGCTGTCCTTTGTTGCAACTGTGAGGGTTTCAAAACAGTTAAAGAAGTTAATAGTCATAGGAAAGAAACAAGAACAGGCTGTCTGGCAATGGTTAGATTGAGATTAGTGGAATCTAGCCGGTGGAGAGTGGATGAAGTCAAGATTGAGCATAACCACTCATTTGATCCTGAGAGAGCACAAAACTCTAAATCACATAAGAGGATAGACAGTGGGGCCAAAAGAAAAATTGAGCCTACTCTAGATGTTGAAGTACGGACAATCAAGTTATATCGAATGCCAAATGCAGATGCATCAAGTTATGGGAGCTTAAGTTCTAATGAAGGAGGAACTAGCAACAATAATAATTTTTCCAGACGTTTgaaacttaaaaaagTTCAGCAAAAAAAGCAAAAAACTGAAGCTCTTAATGATTTGGAGTCACAAAATTCAAACCCATCACTGAAAACAAGATGCTACTATGAGCTGCAACTCTCTAAATTGTACACAAATGCAATATTCAGCAAGTTCCAAGATGAAGTAGTGATGATGTCTTCCTGTTTCTGCATCTCACAAATTCAAACAAATGAGTCTTTAGTGACATACATGGTAAAAGAACATCAAGGAGAAGAAGAACCTGTAAGAGATGATAGGCATTTTGAAGTCATTTATGATAAAGCAGTAACCGAAGTACGTTGCATTTGTAGTTGCGTTAACTTCAAAGGCTACCTATGCAGACATGCCTTGTATATCCTTAATTACAACGGCGTGGAGGAAATTCCATGTCAATATATTTTATCGAGATGGAGGAAGGATTTTAAACGATTGTATGTACCACATCTCAGCTCAGATAATATTGATGTTACAAACCCAGTTCAGTGTTTTGATCATTTGTACAAACGTGCCATGCAAGTAGTTGAAGAAGGCATGGTATCCCAAAATCATTATATGGTTTCTTGGCAGGCATTTAAAGAGTCCTTGAATAAGATTCGGCTTGTAGCAGACAAAATTGAATAA 1353 0.3622 MTDDKDLLLSPNLDITIDDASPNSEQLLEVVDEGNELENDCSQLFEIDGSELENGRDETIVVGSHSGESQGKDCAPPVVGMEFETYDDAYNYYNSYAREIGFAIRVKSSWAKRNSKEKRGAVLCCNCEGFKTVKEVNSHRKETRTGCLAMVRLRLVESSRWRVDEVKIEHNHSFDPERAQNSKSHKRIDSGAKRKIEPTLDVEVRTIKLYRMPNADASSYGSLSSNEGGTSNNNNFSRRLKLKKVQQKKQKTEALNDLESQNSNPSLKTRCYYELQLSKLYTNAIFSKFQDEVVMMSSCFCISQIQTNESLVTYMVKEHQGEEEPVRDDRHFEVIYDKAVTEVRCICSCVNFKGYLCRHALYILNYNGVEEIPCQYILSRWRKDFKRLYVPHLSSDNIDVTNPVQCFDHLYKRAMQVVEEGMVSQNHYMVSWQAFKESLNKIRLVADKIE 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00805 450 Coils Coil 242 262 - -
Car01g00805 450 SMART 26again6 343 370 IPR006564 GO:0008270
Car01g00805 450 MobiDBLite consensus disorder prediction 172 194 - -
Car01g00805 450 MobiDBLite consensus disorder prediction 217 238 - -
Car01g00805 450 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 244 447 IPR031052 GO:0006355
Car01g00805 450 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 219 IPR031052 GO:0006355
Car01g00805 450 PANTHER PROTEIN FAR1-RELATED SEQUENCE 8 244 447 - -
Car01g00805 450 PANTHER PROTEIN FAR1-RELATED SEQUENCE 8 26 219 - -
Car01g00805 450 Pfam FAR1 DNA-binding domain 91 175 IPR004330 -
Car01g00805 450 ProSiteProfiles Zinc finger SWIM-type profile. 332 368 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00805 Car-Chr1 6933633 6936216 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Car01g00805 FAR1 6.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00805 K17604 - gmx:100796448 401.749