Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00753 ATGGCTGAATCAGACAATGAGTCAGGAGGAGGTCAAACAGTGTGCAGAGAGCAAGACAGGTTTCTTCCAATAGCAAACGTGAGTAGGATCATGAAGAAAGCTTTACCAGCAAACGCAAAGATCTCAAAGGAAGCAAAAGAAACAGTACAAGAGTGTGTTTCAGAGTTTATAAGTTTCATAACAGGGGAAGCTTCTGATAAGTGTCAGAAAGAGAAGAGGAAGACAATCAACGGTGATGATCTTCTTTGGGCTATGACAACCCTTGGATTTGAAGATTATGTTGACCCACTCAAGATTTATCTTCATAAGTATAGGGACATGGAAGGGGATAAGACTTCTATTATTGGAAGGACTGATCATAGAGATGATGGGAATGTTGCTGCTGTTGTTTCATCTTCTATGATCATCATGATGGGACATAACATCTATGGATCTGGAACTGGATCACCATCTTCTCGAAGGACTCATAGATAG 474 0.4051 MAESDNESGGGQTVCREQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVDPLKIYLHKYRDMEGDKTSIIGRTDHRDDGNVAAVVSSSMIIMMGHNIYGSGTGSPSSRRTHR 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00753 157 Gene3D Histone, subunit A 12 128 IPR009072 GO:0046982
Car01g00753 157 SUPERFAMILY Histone-fold 18 121 IPR009072 GO:0046982
Car01g00753 157 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 143 IPR027113 GO:0001228|GO:0006355|GO:0016602
Car01g00753 157 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 21 85 IPR003958 -
Car01g00753 157 ProSitePatterns NF-YB/HAP3 subunit signature. 52 68 IPR003956 GO:0005634|GO:0006355|GO:0043565
Car01g00753 157 PRINTS CCAAT-binding transcription factor subunit A signature 49 67 - -
Car01g00753 157 PRINTS CCAAT-binding transcription factor subunit A signature 68 86 - -
Car01g00753 157 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Car01g00753 157 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00753 Car-Chr1 6427382 6428094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00753 1 117 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.645 4.46e-71 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Car01g00753 CBFD_NFYB_HMF 9.7e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00753 K08065 - gmx:100305641 223.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00054 07 578168 578975 Car01g00753 01 6427382 6428094 PCT