Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00744 ATGAATTCAGTACCTTCCAAAAACCTATGGATTCGGAGACAACAGTGTCCTTGTGGTGATTGGAAGTGTTACATTACATATGAAGGTGATGCTGAGGAGTGTTCTGCAGCACCAGAATCAGTCAAATCAGATAAAACATCATCTTGTGGAACTATGATTACCCCTTATGTTGGAATGGTGTTTAAGAGTGATGATGAAGCTTTTGAATATTATGGAAACTTTGCTAGGAAAAATGGTTTCTCCATTAGGAAAGAAAGAAGTAGAATTAGCCCTCAGTTGGGGATTTACAAGCGTGACTTTGTTTGTTATCGATCCGGGTTTGCCCCAGTGAAGAAGAAACCCAATGGAGAAAATCATAGAGATAGGAAATCGGTTAGGTGTGGATGTGATGCAAAAATGTACCTTTCTAAGGAGGTTGTTGATGGTGTTTCTCAATGGTTTGTTGTGCAGTTTAGTAATGTGCACAATCACGAACTTTTGGAAGATGATCAAGTGCGCCTTTTACCTGCGTATCGTAAAATTCATGAGGCTGATCAGGAGCGTATACTCTTGCTTTCGAAAGCAGGGTTTCCGATACACCGGATAGTGAAAATGCTTGAGCTTGAAAAGGGGATTCAAGGCGGGCATTTGCCTTTCTTGGAAAGGGATGTGAGGAACTTTGTCCAAAATCGCAAGAAGGTTGTTCAAGAGAACGAGGCACTGCTAAGTGAGAAAAGAGAAAACGATGTTTTGGAACTTCTTGAGGTTTGCAAAGCCATGAAAGAAGCAGATGTTGAATTTGTTTATGATTTTTCAGTGGATGAGAATGAGAAGGTTGAAAATATAGCTTGGTCGTATGGTGATTCTGTTAACGCGAACGCCGTGTTTGGTGATGTAGTTTATTTTGACACTACTTATCGATCAATCACTTATGGATTGCTTTTTGGAGTGTGGTTTGGTATTGATAGCTGTGGCAGAACCATTTTTTTCGGTTGTGTTTTATTGCAGGATGAAACGCCTCAATCGTTCTCGTGGGCGTTACAGACATTTCTCCGGTTCATGAGAGGAAGATGTCCACAAACAATTCTATCTGATCTTGATCCCGGGCTTAGAGATGCCATTAGAAGCGAATTTCCAGGAACTAAACATATCATTCCACTGTGGAATATTCTGAACAAGGTATCAAGCTGGTTTTCCCTTCCTCTGGGATCTCGCTACGCAGAATTTAAATCCGAGTTCAACGCCTTATTTCACATTGAGAATACAGAGGAATTTGAACTTCAATGGAGCCAAATGATTTCTGTTTTTGGACTTGGTTCAGATAAACATACTGATTTACTGTATTCAGTTCGAGCATCCTGGGCACAATCGTATGTGATAGGTTACTTTTTGGCCCGAATGGCGACAACAGCGTATTCCAAGTCTATAGATTCGTTTCTGAAAGGAATCTTCACCGAACATAGGTGTTTGCGTAGCTTTTTCGAACAGGTTGGCATTTCTGCAAATTTTCGACATCAATCACATCATGAGACTCAATATACAAATCTTAGAACTTGCATACCAATTGAAGAGCATGCACGGAGTATTCTCACACCTTATGCTTTCAATGCTTTGCAGCAAGAGTTATCGCTGGCAATGCAGTATGCTTCATCCGAAATGGCCAATGGATCATATATTATCCGACACTTCAAAAGGTTGGATGGAGAGCGGCTCGTGATATGGCTGGCGGAAGATGAACAGATACACTGCTCTTGCAAGGAGTTTGAATCCTCAGGAATATTATGCAGACACGCTATTCATGTACTTGTAATGAAGAATTACTTTCAGCTTCCTGACAAATACTATTTAAGTAGATGGCGACGGGAATGCTCTTTACTCGTCGAGGATGAACATAACAACCAAAGTATAATTGGTGGTGAATGGTTTCAAGAATATCACTCCCTAGCTGAAACTTTGTTTTCAGAATCATTGATTACGAAAGAGAGATCCGACTATGTTCGCAAAGAACTGATAAAAGAACTTAATAGGATTCTTCATGAGGTTAGAAATTTGCCTGAGACTGATGGAGTCTGCAGCATGAACATGACGGTTTCGCCAAATAGCTAG 2085 0.4053 MNSVPSKNLWIRRQQCPCGDWKCYITYEGDAEECSAAPESVKSDKTSSCGTMITPYVGMVFKSDDEAFEYYGNFARKNGFSIRKERSRISPQLGIYKRDFVCYRSGFAPVKKKPNGENHRDRKSVRCGCDAKMYLSKEVVDGVSQWFVVQFSNVHNHELLEDDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKMLELEKGIQGGHLPFLERDVRNFVQNRKKVVQENEALLSEKRENDVLELLEVCKAMKEADVEFVYDFSVDENEKVENIAWSYGDSVNANAVFGDVVYFDTTYRSITYGLLFGVWFGIDSCGRTIFFGCVLLQDETPQSFSWALQTFLRFMRGRCPQTILSDLDPGLRDAIRSEFPGTKHIIPLWNILNKVSSWFSLPLGSRYAEFKSEFNALFHIENTEEFELQWSQMISVFGLGSDKHTDLLYSVRASWAQSYVIGYFLARMATTAYSKSIDSFLKGIFTEHRCLRSFFEQVGISANFRHQSHHETQYTNLRTCIPIEEHARSILTPYAFNALQQELSLAMQYASSEMANGSYIIRHFKRLDGERLVIWLAEDEQIHCSCKEFESSGILCRHAIHVLVMKNYFQLPDKYYLSRWRRECSLLVEDEHNNQSIIGGEWFQEYHSLAETLFSESLITKERSDYVRKELIKELNRILHEVRNLPETDGVCSMNMTVSPNS 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00744 694 Pfam MULE transposase domain 292 385 IPR018289 -
Car01g00744 694 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 27 682 IPR031052 GO:0006355
Car01g00744 694 Pfam SWIM zinc finger 571 596 IPR007527 GO:0008270
Car01g00744 694 Pfam FAR1 DNA-binding domain 69 160 IPR004330 -
Car01g00744 694 ProSiteProfiles Zinc finger SWIM-type profile. 564 599 IPR007527 GO:0008270
Car01g00744 694 PANTHER FAR1-RELATED SEQUENCE 10 ISOFORM 1 27 682 - -
Car01g00744 694 SMART 26again6 574 601 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00744 Car-Chr1 6348072 6351474 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Car01g00744 MULE 2.5e-16 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00744 - - gmx:100817107 1236.86