Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00741 atgattcatgGGTTTTGTATGTGCGAAAATGATTTTTTTGGGTTTTCGTGTGAGTCAGGTCAAGGAGCAAGTGAAGGGAAAAGGGCTTTGTATCATTGCAATTACTGTAATAAAGATATTACGGGAAAAATACGTATTAAGTGTGCTGTGTGCCCAGATTTTGACTTATGTATAGAATGCTTTTCTGTTGGAGCTGAGGTGACACCTCACAAAAGCAATCATCCTTACAGGGTTATGGATAATTTGTCTTTCCCTCTTATTTGCCCAGACTGGAATGCAGATGATGAAATTTTGCTTCTAGAGGGAATTGAAATGTATGGCATGGGAAACTGGGCAGAAGTCGCTGAGCATGTTGGAACAAAGAACAAAGAAGCATGCATAGAACACTATAGGAATGTCTACTTAAGCTCCCCGTACTTTCCTCTTCCGGACATGTCTCATGTTGTTGGGAAAAACAGAAAAGAACTACTTGCCATGGCAAAAGGACAGGGCGATGACAAGAAAGGAGTTTCCATGGGGGATCTTAGTTTAAAGGAAGAAACACCCTATTCTCCATCTAGAGTCAAAGTTGAAGATTCTCACAAAACTGGTTCCAATAGCCGTTTGGCTTCCAATATGAATTCAGAGTCAGATTCTGCGCCCTCAGGCAACACACATGCTGCATCTGCCACTAACCAGAAGGCGTCCAATGTAGGCCGGGGTAAAGGTGGTCCTGCAATTGTCAAAATGGAAGATTCTCCAGTAGACAGAGATTTTGGAGGAAAGAAGCCAAATTCCTCAGCAAATGAAGGCTCTTTAGTTGAAGCCAGTGGTTATAACGTGAAAAGACAGGAATTTGATCCTGAATATGATAATGATGCTGAACAACTACTCGCCGAAATGGAATTTAAGGACACTGACACTGAGGATGAGAGAGAGATCAAACTTCGTGTGTTGCGTATCTATTCCAAAAGGCTTGATGAAAGAAAGCGCCGGAAGGATTTCATACTTGAAAGAAATTTGTTATACCCAAATCCATTTGAGAAGGATTTAACTCCTGAGGAAAAGACAATATGCAGGAAATATGACATATTCATGCGGTTTCATACCAAGGAAGCTCACGAAGAATTGCTCAGAACAGTCATCTCTGAACACAGAGCTCTTAAAAGAATTGAAGAGCTTAAGGAAGCCCGGGCTGCTGGTTGTCGTACTTCGGCTGAAGCAGATATTTATTTAGCAAATAAGAGAAGAAAGCAATCCGAAGAAAGTGCTCGTAGGGCAAGAGAAAATCCTCAAGTTATCCCAAACAATCACGGGGTTCCAAATGCATTAATGTCTCCAGACTCTGCCAGTAAGGATTTGAGTACTACAAGACCTGCAGGGCCTGCTACTTCAAGTTCTGTCAATGAAATGGATAGAACAGGATACTATGGAACAGATTTACTTTCTGAACCTGAGAAACGCTTGTGCAGTGAGTTAAGGTTGCCTCCGGCCGTGTACCTAAAGATGCAAGAGCAACTGTCTATACAAATGATTGCCGGCAATGTCACCTCGAAATCGGATGCTCATCAAATGTTCAAGATGGATACCATGAAAATTGACAGGGTGTATGATATGCTCATTAAGAAGGGAATTGGTTCACCATGA 1626 0.4157 MIHGFCMCENDFFGFSCESGQGASEGKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGMGNWAEVAEHVGTKNKEACIEHYRNVYLSSPYFPLPDMSHVVGKNRKELLAMAKGQGDDKKGVSMGDLSLKEETPYSPSRVKVEDSHKTGSNSRLASNMNSESDSAPSGNTHAASATNQKASNVGRGKGGPAIVKMEDSPVDRDFGGKKPNSSANEGSLVEASGYNVKRQEFDPEYDNDAEQLLAEMEFKDTDTEDEREIKLRVLRIYSKRLDERKRRKDFILERNLLYPNPFEKDLTPEEKTICRKYDIFMRFHTKEAHEELLRTVISEHRALKRIEELKEARAAGCRTSAEADIYLANKRRKQSEESARRARENPQVIPNNHGVPNALMSPDSASKDLSTTRPAGPATSSSVNEMDRTGYYGTDLLSEPEKRLCSELRLPPAVYLKMQEQLSIQMIAGNVTSKSDAHQMFKMDTMKIDRVYDMLIKKGIGSP 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00741 541 ProSiteProfiles SWIRM domain profile. 455 541 IPR007526 GO:0005515
Car01g00741 541 ProSiteProfiles Myb-like domain profile. 91 134 IPR001005 -
Car01g00741 541 ProSitePatterns Zinc finger ZZ-type signature. 33 60 IPR000433 GO:0008270
Car01g00741 541 ProSiteProfiles SANT domain profile. 86 138 IPR017884 -
Car01g00741 541 MobiDBLite consensus disorder prediction 408 471 - -
Car01g00741 541 ProSiteProfiles Zinc finger ZZ-type profile. 28 84 IPR000433 GO:0008270
Car01g00741 541 SUPERFAMILY Homeodomain-like 451 538 IPR009057 -
Car01g00741 541 MobiDBLite consensus disorder prediction 197 231 - -
Car01g00741 541 SUPERFAMILY Homeodomain-like 84 137 IPR009057 -
Car01g00741 541 CDD ZZ_ADA2 31 79 IPR041983 -
Car01g00741 541 MobiDBLite consensus disorder prediction 159 174 - -
Car01g00741 541 CDD SANT 91 133 IPR001005 -
Car01g00741 541 Pfam Zinc finger, ZZ type 30 71 IPR000433 GO:0008270
Car01g00741 541 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 18 540 - -
Car01g00741 541 MobiDBLite consensus disorder prediction 159 266 - -
Car01g00741 541 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 138 IPR017930 -
Car01g00741 541 Pfam Myb-like DNA-binding domain 90 133 IPR001005 -
Car01g00741 541 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 18 540 IPR034318 GO:0003713|GO:0006357|GO:0035065
Car01g00741 541 PIRSF Txn_adaptor_ADA2 18 541 IPR016827 GO:0003713|GO:0006357|GO:0035065
Car01g00741 541 Gene3D - 22 79 IPR043145 -
Car01g00741 541 Gene3D - 456 539 IPR036388 -
Car01g00741 541 SMART sant 87 136 IPR001005 -
Car01g00741 541 MobiDBLite consensus disorder prediction 428 466 - -
Car01g00741 541 SUPERFAMILY RING/U-box 31 93 - -
Car01g00741 541 Gene3D - 85 136 - -
Car01g00741 541 SMART zz_5 27 72 IPR000433 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00741 Car-Chr1 6315159 6320985 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00741 21 539 EF-hand Containing Proteins AT3G07740 47.963 2.14e-158 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Car01g00741 Myb_DNA-binding 2.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00741 K11314 - gmx:100811887 909.057