Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00732 ATGGACCCTGGGAAGCTATTTATCGGCGGGATTTCCTGGGACACAAATGAAGACCGACTCAGACAATATTTTCAGAACTTCGGTGATGTAGTCGAAGCTGTGATTATGAAAGATCGCACCACGGGGCGTGCCCGTGGTTTTGGATTTGTTGTTTTTGCCGATCCTTCTGTTGCTGAACGAGTTGTTATGGAAAAACATGTCATAGATGGTAGAACTGTTGAAGCAAAAAAAGCTGTTCCTAGAGATGATCAGAACGTGTTTAGCAAAAGCAACAGCAGCGGTCACGGGTCACCTGGTCCTGCTCCTATACGCACAAAGAAGATATTTGTTGGAGGTCTAGCATCCACGGTTACTGAGAGTGATTTTAAGAGTTACTTTGATCAATTTGGAACAATTACTGATGTTGTTGTGATGTACGACCATAACACTCAACGGCCACGGGGTTTTGGATTCATCACATATGATTCTGAGGAAGCAGTCGAGAAAGTGCTGCACAAAACTTTCCACGAACTTAATGGTAAAATGGTTGAGGTTAAGAGGGCTGTCCCAAAGGAATTATCTCCAGGTCCAAGTAGAGGCCAGCTAGGTGGATTTAGTTACGGTATTGGTTTGAGTAGAGTTAGTAGTTTTTCTAATGGTTTCACTCAGGGATATAATCCAAGTCTCATTGGAGGACACGGATTTAGAATAGACGGTAGAATGAGTCCTGCTAATGTTGGCCGTAGTGGATATACTCTTTTCAGTCCTAGTTATGGGACAGGACTCAACTTTGAGCCACCATTGAGCCAAAATGAAAATGATAACTTTACGTCTAACTTTGTCATGGGACGGGCGTTGAGCTCTCCATACAGTGCAAGTCCGAGCAGGTACAATAATCCCATGGGGTATCCTGGTTCAAATGTTGGCAACAATTCAGCCATAAGTTCCACAAGTCAGAGTTTGTGGGGTAATGGGAATCTTAACTATGCTAATAACCATGCAAGCTCTGATGCTTTTGTTGGTTATGGAAGTGAAAATTCAATGGATTCTTTTGGTAATATTGGATCACTTTGGAGTACCTCTGTTGGTACTAATCAAGCTGGAACTATTGGCTCTGGATATGGTAAGAGCAGTCTTAATTATAGGCTTGGAGATATGATTTTAGGGTCAAAAGCAGTAGGTTATGGAAAGAACAGTGAAAACATTGTTGAATCAGATTCATCGTTTGCTTTCTCAAATGGCGGTTACGGCGAAGCATACAAAAATTCTTATGAAGCTGGGCCATTTTATCAAGACCATACTTGGAGATCAACAACTTCAGAACTTGAGGATTCTGGTTCTCTTAGTTTTGGTCTTGAAAATGCTGTTTCGGATTTAATGCGCAAAAGCTCTGGTGGTGGTCACATTGGGGCTTATGCTGTTGCTAATAGACAATCAAACAGAGGAATTGCTGCCTAG 1437 0.421 MDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEKHVIDGRTVEAKKAVPRDDQNVFSKSNSSGHGSPGPAPIRTKKIFVGGLASTVTESDFKSYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPKELSPGPSRGQLGGFSYGIGLSRVSSFSNGFTQGYNPSLIGGHGFRIDGRMSPANVGRSGYTLFSPSYGTGLNFEPPLSQNENDNFTSNFVMGRALSSPYSASPSRYNNPMGYPGSNVGNNSAISSTSQSLWGNGNLNYANNHASSDAFVGYGSENSMDSFGNIGSLWSTSVGTNQAGTIGSGYGKSSLNYRLGDMILGSKAVGYGKNSENIVESDSSFAFSNGGYGEAYKNSYEAGPFYQDHTWRSTTSELEDSGSLSFGLENAVSDLMRKSSGGGHIGAYAVANRQSNRGIAA 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00732 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Car01g00732 478 MobiDBLite consensus disorder prediction 79 102 - -
Car01g00732 478 Gene3D - 3 86 IPR012677 -
Car01g00732 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Car01g00732 478 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 478 - -
Car01g00732 478 CDD RRM1_hnRNPA_hnRNPD_like 6 76 - -
Car01g00732 478 MobiDBLite consensus disorder prediction 84 98 - -
Car01g00732 478 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Car01g00732 478 SMART rrm1_1 107 179 IPR000504 GO:0003723
Car01g00732 478 SMART rrm1_1 5 76 IPR000504 GO:0003723
Car01g00732 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Car01g00732 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 72 IPR000504 GO:0003723
Car01g00732 478 SUPERFAMILY RNA-binding domain, RBD 3 99 IPR035979 GO:0003676
Car01g00732 478 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 478 - -
Car01g00732 478 Gene3D - 103 189 IPR012677 -
Car01g00732 478 SUPERFAMILY RNA-binding domain, RBD 99 209 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00732 Car-Chr1 6247319 6251721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00732 6 185 Eukaryotic Initiation Factors Gene Family AT2G36660 28.723 1.31e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00732 K14411 - pvy:116115801 623.239