Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00729 ATGGTTTCTCTGGAAGAATCTCGCTCTGATTCGAACCGTTTCCCTTTATCACGAAGCTACCAGTATCACTCCTCTGTTTCCTCCAAAACGCAGCGTAACATAGGAAGATCCATGCGAACCATACGATCAAGTATCTTCCAAGATGATAACAGCAGTTGCACGTTTACCGAGAGGTCCACGTGTGTATCGGAAAATCTCACCGATTCCGTCGTCGACCTCCGTCTCGGCGAACTCGCTTCCCGGAACAACAAATCCGTTAAGTCATCTACAACAGAGCAGGACCTTCTTGATCTCTCACAAGCCTTCAGTGAATTCTCCGCTTGTAGCAGCGATATCTCCGGTGAACTACAACGGTTAGCGACTTTACCATCGCCGGAATGTAACCAAATAAGCGACACCGGTGGAGATGGTGAGCAGGAACCTGAACCGGAGCCTTGCATGGGGTTTTTACAGAGGGATAATTTCTCAACGGAGATTATTGAAAGTATTTCGCCGGAGGATCTTCAACCGACAGTGAAACTCTGCATCGACGGCCTTCAGTCTTCATCGGTGGCTGTGAAACGATCAGCGGCGGCGAAACTGAGATTACTTGCCAAGAATCGCGCCGATAATAGAGTTTTGATCGGAGAATCCGGCGCGGTTCCTTTTCTCGTTCCTTTGCTTCGATGCAGCGATCCGTGGACTCAAGAACACGCAGTAACAGCGCTTCTGAATCTTTCACTTCACGAAGACAACAAGAAGCTGATAACAAATGCCGGAGCCGTGAAGTCGTTGATTTACGTGCTGAAAACAGGAACTGAAACTTCGAAGCAAAACGCGGCTTGTGCGCTTCTAAGCTTAGCTTTGGTTGAGGAAAACAAAAGCTCAATCGGAGCTTCAGGTGCGATTCCACCGTTAGTTTCGCTTCTTCTTAACGGTTCCAACAGAGGGAAAAAAGACGCGCTAACGACGCTGTACAAGCTTTGTTCTGTTAAGCAGAACAAAGAGAGAGCGGTGAGTGCTGGCGTGGTGAAACCTCTGGTGGAGCTAGTGGCGGAGCAAGGGAATGGTATGATGGAGAAAGCAATGGTGGTGTTGAATAGCTTAGCGGGGATTGAGGAAGGGAAGGATGCGATTGTTGAAGAAGGTGGAATTGCGGCTCTTGTTGAAGCCATTGAAGATGGGTCTTTGAAAGGAAAGGAATTTGCTGTTTTAACTCTTTTGCAGCTTTGTGCTGACAGTGTTACCAACAGAGGGTTACTTGTTAGAGAAGGTGGGATTCCTCCTCTTGTTGCTCTTTCTCAGAATGGAACTCCTCGAGCTAAGCATAAGGCTGAGACACTCCTTCGATATTTGAGAGAATCAAGACAAGAAGCATCGACTTCAACTTCTTAG 1374 0.4767 MVSLEESRSDSNRFPLSRSYQYHSSVSSKTQRNIGRSMRTIRSSIFQDDNSSCTFTERSTCVSENLTDSVVDLRLGELASRNNKSVKSSTTEQDLLDLSQAFSEFSACSSDISGELQRLATLPSPECNQISDTGGDGEQEPEPEPCMGFLQRDNFSTEIIESISPEDLQPTVKLCIDGLQSSSVAVKRSAAAKLRLLAKNRADNRVLIGESGAVPFLVPLLRCSDPWTQEHAVTALLNLSLHEDNKKLITNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSNRGKKDALTTLYKLCSVKQNKERAVSAGVVKPLVELVAEQGNGMMEKAMVVLNSLAGIEEGKDAIVEEGGIAALVEAIEDGSLKGKEFAVLTLLQLCADSVTNRGLLVREGGIPPLVALSQNGTPRAKHKAETLLRYLRESRQEASTSTS 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00729 457 Pfam Armadillo/beta-catenin-like repeat 285 323 IPR000225 GO:0005515
Car01g00729 457 Pfam Armadillo/beta-catenin-like repeat 203 240 IPR000225 GO:0005515
Car01g00729 457 MobiDBLite consensus disorder prediction 125 145 - -
Car01g00729 457 PANTHER U BOX DOMAIN-CONTAINING 6 454 - -
Car01g00729 457 SUPERFAMILY ARM repeat 169 446 IPR016024 -
Car01g00729 457 Gene3D - 154 314 IPR011989 -
Car01g00729 457 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 294 336 IPR000225 GO:0005515
Car01g00729 457 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 335 377 IPR000225 GO:0005515
Car01g00729 457 SMART arm_5 407 447 IPR000225 GO:0005515
Car01g00729 457 SMART arm_5 283 323 IPR000225 GO:0005515
Car01g00729 457 SMART arm_5 365 405 IPR000225 GO:0005515
Car01g00729 457 SMART arm_5 201 241 IPR000225 GO:0005515
Car01g00729 457 SMART arm_5 242 282 IPR000225 GO:0005515
Car01g00729 457 Gene3D - 315 456 IPR011989 -
Car01g00729 457 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 6 454 - -
Car01g00729 457 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 212 254 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00729 Car-Chr1 6224378 6227191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00729 167 450 U-box Gene Family AT2G23140 51.056 6.70e-86 274