Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00721 ATGTCACAATCAATCACCAAAACCCTCACCGTCAACTCATTCCACCAAAACAAATTAAACGACCACACCTCCTTCTCCTCCTCGACGATGAAAAACGACACCAAAACGACGCCGTCACAGTTACAGTTCTTCGTACGCCTGATGTGGACCTGCAAAAGCTTAGTGATTCGTGCTTCAAGAGAAGACACAGTGAAATCACTTCTCAAAGCGATTTCGTTCAAAACCAAAATTCCGATTGAATATCAACGGTTAATATACAGAGGAAAACAGCTTCACAGTGAACAGAGTCTTGCTGAATGCTGTATTGAAAACGACACGTGTCTTCAATTGATTGGACACTTGAGGAGTATGGGGTTTCCTATGGGTTGTGAAGCTCTAGACGATACCGTTTCGTTGATTCTTCGTCTTTGTAAAGGTGAATCGGTGAAAGACGCTTCAAGAATCCTTCATTGTCGCATGATGAAGTATATGGAACATAAGGAATGTGTTTCCGTTTTCATGTTTATGAAAGTTCCTTTGTTAATGGTAACTCTTTACAATTCCCCTTACGCAAATAACAAAGGCATTGCTGATTTTTGTATTCGGCAATTAATGATATTTTGTGATCATATTGAGACCGCACAGTTGCAGGTTATTTATTTTGAAGTTGTTTTGGAGTTTTGTGAATTGCTTAGAGGGGTAGGGTTTGAGAGTAATGATCTTTTGTACGTTGTTTGCCGGGGTAGTTTTGGAAGAATGTTGGAGAGTGTTGGTGGTGTTAGTGATAGGGATACTAAACGGAGGATTTTGTTTCAGGGTGGTTTTGATTGTGTTGTTGAGATTTCAGATAAGTTGTTGAGGTTTTTGGATTTGAGTTTTGGAAGAATGTTGGAGAGTGTTGGTGGTGTTAGTGATAGGGATACTAGCCAGGCACTATTGTGCAGAGATGTTCATGATTTTGAGAAATTCTCTGCTCCTTTGAGGGTTGGAATCGCGGAGCATCAAGGGGCGTTTGAAGTACCTGTGGATTGTGGATTTTTGTGTGAGAAAGATTCCTTGATTGCACGAGTAGTTGATCGCTTCCGTCTTGTATTTATTCAGTTATTGATCAAAATGGATGAGTGCCTTCAAAGCATGGAGGGTTGCTTGGTTAACAAGGAACAAGGGGAAGGGGGTGTGAGTGTTATCTATTATGGGTGGTATTATTATCTTTCCATCTTGAAGGAATTGTATCACATTTCTAAGCTCTATACAGGCGCAGAAGATAAGTTTTGGGGAGTTTTGTTGCGTCGAAAAAGTATGCTATGTCATCTGATTGTTAAGTACACAGAGAATACCGATGATCATAGGTGGGTTCTCAAGAACAGAAGTGTGACTGATTTTGAATCCAGGAGGCACTTGGTGATGATGCTATTCTTCCATGAATTAAAAGATGGATTATGGGATTTTCATGAGATGCTTATTGACAGGTCTCAGTTGTTGGCTGAATCTTTCGAGTACATATCACAAGCTAAGCCTAAATCTCTGCAGAGGGGTCTATTTATGGAATTCAAAAATGAGGATGCTACAGGACCAGGTGTACTGAGGGAGTGGTTTGTTTTGGTGTGTCAGGAAATATTTAGTCCGCAAAATGCTCTTTTTATGGCATGTCCAAATGACCGCAGGAGATTTTTCCCTAATGCTGCATCTAAGATACATCCTCTGCACTTAGAGTACTTCAGCTTCTGTGGACGTATTATTGCATTAGCTTTAAGGAGTAAGGTGCACGTGGGAATTGTTTTTGATCGTGTGTTTCATGGGCAATTGGCTGGGGAATATATTACTTTAGAAGATATCCGGGAAGCAGATCCTATAATGTATAGTAGCTGCAAGCAAATATTGAATATGGATGCTGATTCTATTGATTCAGATACATTAGGATTGACATTTGCCACAGAGGTGTGGGAATTAGGACGCAGGGAAGTGATTGAGCTTTGCCTTGGTGGAGAAAGCCGCGTTGTGGATAGTAAGAACAGGGAGGAGTATGTCCGTCTTCTTATACACAATCGTTTTGTAACATCCATATCTAAGCAGGTATCACATTTTGCCAAGGGTTTTGCTGATATTCTGTCCGGCTCAAGCCAAGAGTTCTTCCAATCTTTAGAGCTTGAAGAACTTGATTGGATGCTGCATGGGAGTGAAAATGCCATTTCTGTTGAAGATTGGAAGGCACATACTGTGTATAATGGCTATAAAGATATTGACCGTCAGATATCTTGGTTTTGGGAGATCGTTGGGAGAATGTCAGTAGAGCAAAGGAAGGTTCTTCTGTTCTTTTGGACATCTGTGAAACATTTACCAGTTGAAGGTTTCCATGGCTTGGATTCCCGTCTACACATTTGCAGAACCAGTGAACTTGATAGTCATTTGCCATCATCTCACACATGCTTTTATGAGCTGTGCTTTCCCCCATATTCTTCTTTGGCTATCATGCAAGATCGCCTTCGAGTCATCACTCAAGAACACATCGGCTGCAGTTTTGGTACTCCATGA 2511 0.4094 MSQSITKTLTVNSFHQNKLNDHTSFSSSTMKNDTKTTPSQLQFFVRLMWTCKSLVIRASREDTVKSLLKAISFKTKIPIEYQRLIYRGKQLHSEQSLAECCIENDTCLQLIGHLRSMGFPMGCEALDDTVSLILRLCKGESVKDASRILHCRMMKYMEHKECVSVFMFMKVPLLMVTLYNSPYANNKGIADFCIRQLMIFCDHIETAQLQVIYFEVVLEFCELLRGVGFESNDLLYVVCRGSFGRMLESVGGVSDRDTKRRILFQGGFDCVVEISDKLLRFLDLSFGRMLESVGGVSDRDTSQALLCRDVHDFEKFSAPLRVGIAEHQGAFEVPVDCGFLCEKDSLIARVVDRFRLVFIQLLIKMDECLQSMEGCLVNKEQGEGGVSVIYYGWYYYLSILKELYHISKLYTGAEDKFWGVLLRRKSMLCHLIVKYTENTDDHRWVLKNRSVTDFESRRHLVMMLFFHELKDGLWDFHEMLIDRSQLLAESFEYISQAKPKSLQRGLFMEFKNEDATGPGVLREWFVLVCQEIFSPQNALFMACPNDRRRFFPNAASKIHPLHLEYFSFCGRIIALALRSKVHVGIVFDRVFHGQLAGEYITLEDIREADPIMYSSCKQILNMDADSIDSDTLGLTFATEVWELGRREVIELCLGGESRVVDSKNREEYVRLLIHNRFVTSISKQVSHFAKGFADILSGSSQEFFQSLELEELDWMLHGSENAISVEDWKAHTVYNGYKDIDRQISWFWEIVGRMSVEQRKVLLFFWTSVKHLPVEGFHGLDSRLHICRTSELDSHLPSSHTCFYELCFPPYSSLAIMQDRLRVITQEHIGCSFGTP 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00721 836 Gene3D Hect, E3 ligase catalytic domain 719 834 - -
Car01g00721 836 ProSiteProfiles HECT domain profile. 498 836 IPR000569 GO:0004842
Car01g00721 836 Gene3D Hect, E3 ligase catalytic domain 598 680 - -
Car01g00721 836 SUPERFAMILY Hect, E3 ligase catalytic domain 465 822 IPR035983 GO:0004842
Car01g00721 836 Gene3D - 33 148 - -
Car01g00721 836 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 26 833 - -
Car01g00721 836 Pfam HECT-domain (ubiquitin-transferase) 527 828 IPR000569 GO:0004842
Car01g00721 836 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 26 833 - -
Car01g00721 836 SUPERFAMILY Ubiquitin-like 36 115 IPR029071 -
Car01g00721 836 ProSiteProfiles Ubiquitin domain profile. 41 117 IPR000626 GO:0005515
Car01g00721 836 Pfam Ubiquitin family 44 114 IPR000626 GO:0005515
Car01g00721 836 CDD HECTc 477 834 IPR000569 GO:0004842
Car01g00721 836 SMART hect_3 496 834 IPR000569 GO:0004842
Car01g00721 836 SMART ubq_7 41 113 IPR000626 GO:0005515
Car01g00721 836 Gene3D Hect, E3 ligase catalytic domains 480 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00721 Car-Chr1 6099516 6104612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00721 41 115 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 34.667 1.88e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00721 - - mtr:MTR_2g025790 1038.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00079 07 775146 781770 Car01g00721 01 6099516 6104612 PCT