Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00700 ATGAGTCAGCTCGGTTTGTTATTGCAAGAACCGGTTCGGACTCAGAGGGAGACAAGAACGATTCTAGGTTTGTTAAGGGAGCAAATGGACGGTGTTGATGGAGAGCCTCGTAGGAGGCGTAGTTTCAAAGAGCGGCTAGGATTCATCGGTTGTTGTGGGGCCACATGGGGATTTCGTTCTTCAACTCAATCGTCGCAGCAACAACAACAGCAACTtccggatacggatccgaatcaagatccgaatATATGCGTGGGCCCGGAGATTCCGACGGGCTCGTCGAGTATGAATTTAGCGGCGGCGTTGTCGGCAGAGAGAGAACTCCGTGGACCGCCGGGAGAAACTATCCCCGGTGCGGGAAGGACGCCGGGGACGCCGTGGAGAGTGTCGCTGATGCGGTTGTTGGAGGAAACGGAAAACGGGGAAGCGGTGGCGGTAACGGCTGAGTTGGAAGGAAAAGTAGGCAGTGTGGCAGGGAATGATTCGGTGTGTTGCGTGTGCATGGGAAGGAATAGAGGTGCGGCGTTTATTCCATGTGGACACACTTTTTGCAGGGTGTGTTCTAGGGAGCTGTGGCTGAACAGAGGCTCTTGTCCCCTTTGCAATCGTTCAATAGTTGAGATTCTTGACATTTTCTAG 639 0.5086 MSQLGLLLQEPVRTQRETRTILGLLREQMDGVDGEPRRRRSFKERLGFIGCCGATWGFRSSTQSSQQQQQQLPDTDPNQDPNICVGPEIPTGSSSMNLAAALSAERELRGPPGETIPGAGRTPGTPWRVSLMRLLEETENGEAVAVTAELEGKVGSVAGNDSVCCVCMGRNRGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSIVEILDIF 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00700 212 CDD RING-HC 164 201 - -
Car01g00700 212 MobiDBLite consensus disorder prediction 60 92 - -
Car01g00700 212 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 17 212 - -
Car01g00700 212 PANTHER OS01G0917900 PROTEIN 17 212 - -
Car01g00700 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 211 IPR013083 -
Car01g00700 212 MobiDBLite consensus disorder prediction 60 78 - -
Car01g00700 212 SUPERFAMILY RING/U-box 159 209 - -
Car01g00700 212 SMART ring_2 164 201 IPR001841 -
Car01g00700 212 ProSiteProfiles Zinc finger RING-type profile. 164 202 IPR001841 -
Car01g00700 212 Pfam Zinc finger, C3HC4 type (RING finger) 161 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00700 Car-Chr1 5848518 5849657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00700 21 212 C3H Transcription Factor Family AT4G22250 52.736 4.35e-59 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00700 - - gmx:100804292 247.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00098 07 895876 896929 Car01g00700 01 5848518 5849657 PCT