Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00693 ATGGAGGGTAGTTCTAATGGAACATCTTCTTATGTTATGGCTTTTGGAGAAAACAGTGGTGGGCTATGTCCAATGATGATGATGCCTTTAGTCACTTCTACTTCTCATCATGCAACTACTACTCATCATCCATTAaataataataataataatattaacactactaataccactaatGCAAATACAAACTCTCTCTTCCTTCCTATATCTTCCACTAATAATAATAACCTCTTCACCAACTGTAATAACACTACTGTAGGTAACAATACTACCTCTTCTATCATGTTTCACAACAACAACAACACTCCTGGTTTAGGTTACTATTTTATGGacaataacaacaacaacaacaaTGGAAGCtcttcttcctcttcttcttctGTTAAAGCCAAGATCATGGCTCATCCTCACTATCACCGTCTCTTGGAAGCTTACATCAATTGTCAAAAGGTTGGAGCACCAGGTGAAGTGGTGGTGAGGTTAGAAGAAGCATGTGCATCTGCAGTGACAATGGGTGGAGATGCAGTTGGATCAGGGTGTTTAGGTGAAGATCCAGCTTTGGATCAGTTCATGGAAGCTTACTGTGAGATGTTGATTAAGTATGAGCAAGAACTTTCCAAACCCTTCAAGGAAGCCATGCTTTTTCTTCAAAGGATTGAGTCTCAGTTCAAAAATCTCACTATTTCTTCTTCAGATAATATTGGTTGTAATGAAGGTGGAGGAGATAGGAATGGATCATCTGAAGAAGATGTTGATCTATACAACATGATAGATCCTCAGGCAGAAGACAGGGAATTAAAGGGTCAACTATTGAGAAAGTACAGTGGATATTTGGGGAGTCTGAAGCAAGAATTCATGAAGAAGAGGAAAAAAGGAAAACTACCAAAAGAAGCAAGGCAGCAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCTTCTGAATCACAGAAGCTGGCACTTGCAGAGTCAACAGGTTTGGATCAAAAGCAAATAAACAACTGGTTTATTAATCAAAGGAAAAGGCACTGGAAGCCTTCCGAGGATATGCAGTTTGTTGTGATGGATCCAAGTCATCCACATTATTACATGGATAATGTTCTCACCAATCCATTTTCCATGGATCTTCCTAACACCATGCTCTAG 1152 0.3707 MEGSSNGTSSYVMAFGENSGGLCPMMMMPLVTSTSHHATTTHHPLNNNNNNINTTNTTNANTNSLFLPISSTNNNNLFTNCNNTTVGNNTTSSIMFHNNNNTPGLGYYFMDNNNNNNNGSSSSSSSSVKAKIMAHPHYHRLLEAYINCQKVGAPGEVVVRLEEACASAVTMGGDAVGSGCLGEDPALDQFMEAYCEMLIKYEQELSKPFKEAMLFLQRIESQFKNLTISSSDNIGCNEGGGDRNGSSEEDVDLYNMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYMDNVLTNPFSMDLPNTML 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00693 383 Pfam ELK domain 265 286 IPR005539 GO:0003677
Car01g00693 383 SMART KNOX2_2 177 228 IPR005541 GO:0003677|GO:0005634
Car01g00693 383 MobiDBLite consensus disorder prediction 34 56 - -
Car01g00693 383 SMART ELK_2 265 286 IPR005539 GO:0003677
Car01g00693 383 ProSiteProfiles 'Homeobox' domain profile. 285 348 IPR001356 GO:0003677
Car01g00693 383 Gene3D - 290 352 - -
Car01g00693 383 SMART HOX_1 287 352 IPR001356 GO:0003677
Car01g00693 383 ProSiteProfiles ELK domain profile. 265 285 IPR005539 GO:0003677
Car01g00693 383 CDD homeodomain 297 349 IPR001356 GO:0003677
Car01g00693 383 SMART KNOX1_2 126 170 IPR005540 GO:0003677|GO:0005634
Car01g00693 383 Pfam KNOX1 domain 128 166 IPR005540 GO:0003677|GO:0005634
Car01g00693 383 ProSitePatterns 'Homeobox' domain signature. 323 346 IPR017970 GO:0000981|GO:0006355
Car01g00693 383 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 372 - -
Car01g00693 383 PANTHER - 3 372 - -
Car01g00693 383 Pfam KNOX2 domain 181 227 IPR005541 GO:0003677|GO:0005634
Car01g00693 383 SUPERFAMILY Homeodomain-like 287 363 IPR009057 -
Car01g00693 383 Pfam Homeobox KN domain 305 344 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00693 Car-Chr1 5760263 5766892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00693 128 383 Homeobox Transcription Factor Family AT1G62360 79.771 5.32e-134 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Car01g00693 KNOX2 8.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00693 - - gmx:100805837 533.872