Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00687 ATGAAGATTGTATTTGTAACAAAGGGAAAGTCAAATCAACGAACAGAGGATGAGTTGGAATTTTCAAGGAGCTTACATTCCACTGGAATTCCAATAACACAAAATCATAAATATGGTTATAAGAAACCAAAACCAAGAGAAGAAAATTACATTCTACCCTGTCTAGAGAAGAGTACTGAAAAAACCTCAAGAAATTCTGGAATTTCAAAGAAGAAAAGGGTTGAGAAATGTTGTAGAATTGATATTACAAATACAAAATCAAACAATAAAAGAATATTACAAGACAGTTTATTGAGTAACAGTTTTGTAGAAGAAGAAGATGATGAGGAAGTTGTTGTTTCAAAGACAAAGTCTAGAAGCAAAGCTAGAAAATTGGATCATATAATGGATACTGAACAAAATTCCAGAACATGCCATCAATGCTTGAAGAAGGATAGGGTATCATTTGTACCTTGTATAAAATGTCAGAAAATGTACTGTTTAAGGTGCATTAATCAATGGTACCCCAATATGTCAATAGAAAATGTTGCACAGAAATGCCCCTTCTGCCGTAAGAATTGCAATTGCAACGTTTGCTTGTGTTCAAGAGGAATGATTAAGACATCTAACAAGAACATCAAAGATTTTGAAAAAGTTCATCACCTCCAGTATATGATTAACTTACTACTTCCATTTGTTCAAAAAATTTGTGATGAACAAAGTCATGAACAAGAGATTGAAGCTAAAATACAAGGAAAATCATGTTCTGAGATTGAGATACCACAAACTTCGTGTTATGATGATGAACGTATCTATTGTGACAATTGTGCTACTTCAATTATTGATCTTCATAGAAGCTGTCCCAAGTGTTCCTATGAATTATGTCTAAGTTGTTGCAAAGAAATCCGCAATGGAAGTATCATACCGCACTCAGAAATGAAGTTTCAATACGTGGATAGAGGTTATGATTACATGCATGGAGGTGATGGTGATCCTCTACAAGCAGTGTCTTGTGATTTTGATACTTCAGAGAGTAATGTTGTGATATTTACCAAATGGAATCCAAACAGTGATGGAAGTGTTGAATGTGCTCCAAAAGAATTTGGGGGCTGTGGTGGCGGCTGTGTGTTGGAGCTGAAACGCATGCTTCCAAAAGGGAAGATATCTGATTTGGTAAACAAAGCTAGCAATATGCTAAAACATTTTTGCAATAATGAACAAATGAAGGTTCATAAAGAAGAAGTGTCAAGTTCTATGATAAGAGCTGCTTTTAGAGATGGCAAGAATGATAATAATATATATTGTCCTGTTTCAAGTGACCTTGTTAAAGGAGGGTTGTTTGAGTTCCAAAAGCATTGGAGGAATGGTGAACCAATAATAGTACGTGATGTTCTTAAACAAGGGACAGGTTTGAGTTGGGAGCCAATGGTTACTTGGAGAGCATTGTGTGGAAATTTGGTTTCAGGTGTCAGCTCAAATTTTATGTCACAAGTTAAGGCCATTGATTGCTTGGCTAGTTGTGAGGTAGAAATTAACACTCGCAAGTTCTTCCAAGGTTATAAGGAGGGAAGAACATATAGGAATTTCTGGCCAGAGATGCTCAAGCTAAAAGACTGGCCTCCTTCTGACAAGTTTGAAGATGTTCTGCCGCGCCATTGCGATGAAGTTATCCGTTGTTTGCCATTTCAAGAATATAGCGATCCTCGAGCCGGAATCCTCAACCTTGCTGCTAAGTTGCCACCCCATGTCATAAAGCCTGACTTAGGTCCAAAAACTTATATTGCTTATGGAATCAAAGAAGAACTTGGCAGAGGGGATTCTGTGACAAAACTTCACTGTGATATGGCAGATGCAGTGAATATTTTGACTCATACAACTGAGGTGATATTAACTGATGAACGACATTCTGTTATTAGAAAATTGAAAAAAGCACATAAGATCCAAGATGTGAAAGAGGGTCGTGCTCAATATAATAGAAAACAGATAGAAGACAAAGAAAAGTACCCTTTTGAGATCAATGGAGAGTTGTTCCCAAATGAAGTGCAAGCTATCTCAAAAGAAACAACAGAAACAGGTGGTGCTCTTTGGGACATATTCAGAAGAGAGGATACTGAAAAGTTAGAAGCATATTTAAGAAAACACTCCAAAGAATTTAGGCATATTTTTTGCTCTCCAGTTCAACAGGTTTTCCATCCAATTCATGACCAATGTTTTTATTTGACTTTGGAGCATAAGAAGAAGCTAAAGGAAGAGTTTGGTGTAGAACCTTGGACATTTGAGCAGAAACTTGGTGAAGCAGTATTTATACCTGCTGGATGTCCACACCAAGTCAGAAATCTAAAGTCATGCACAAAAGTTGCCTTAGACTTTGTGTCACCAGAAAATGTGCATATGTGCATGTCTTTAACTGATGAGTTTCGTCGTCTTCCAAAGAATCACAAGGCAAGAGAAGACAAACTTGAGATAAAGAAGATGATAGTCTATGCTGTTGACCAAGCTGTCCAAGAATTAAAAGCTTTCAATAGATGCTCTCCACTGGCTTGA 2523 0.3682 MKIVFVTKGKSNQRTEDELEFSRSLHSTGIPITQNHKYGYKKPKPREENYILPCLEKSTEKTSRNSGISKKKRVEKCCRIDITNTKSNNKRILQDSLLSNSFVEEEDDEEVVVSKTKSRSKARKLDHIMDTEQNSRTCHQCLKKDRVSFVPCIKCQKMYCLRCINQWYPNMSIENVAQKCPFCRKNCNCNVCLCSRGMIKTSNKNIKDFEKVHHLQYMINLLLPFVQKICDEQSHEQEIEAKIQGKSCSEIEIPQTSCYDDERIYCDNCATSIIDLHRSCPKCSYELCLSCCKEIRNGSIIPHSEMKFQYVDRGYDYMHGGDGDPLQAVSCDFDTSESNVVIFTKWNPNSDGSVECAPKEFGGCGGGCVLELKRMLPKGKISDLVNKASNMLKHFCNNEQMKVHKEEVSSSMIRAAFRDGKNDNNIYCPVSSDLVKGGLFEFQKHWRNGEPIIVRDVLKQGTGLSWEPMVTWRALCGNLVSGVSSNFMSQVKAIDCLASCEVEINTRKFFQGYKEGRTYRNFWPEMLKLKDWPPSDKFEDVLPRHCDEVIRCLPFQEYSDPRAGILNLAAKLPPHVIKPDLGPKTYIAYGIKEELGRGDSVTKLHCDMADAVNILTHTTEVILTDERHSVIRKLKKAHKIQDVKEGRAQYNRKQIEDKEKYPFEINGELFPNEVQAISKETTETGGALWDIFRREDTEKLEAYLRKHSKEFRHIFCSPVQQVFHPIHDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVALDFVSPENVHMCMSLTDEFRRLPKNHKAREDKLEIKKMIVYAVDQAVQELKAFNRCSPLA 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00687 840 Pfam JmjC domain, hydroxylase 678 783 IPR003347 -
Car01g00687 840 CDD cupin_RmlC-like 723 784 - -
Car01g00687 840 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 30 836 IPR045109 GO:0032454|GO:0033169
Car01g00687 840 ProSiteProfiles Zinc finger RING-type profile. 138 184 IPR001841 -
Car01g00687 840 ProSiteProfiles JmjC domain profile. 561 800 IPR003347 -
Car01g00687 840 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN PROTEIN 30 836 - -
Car01g00687 840 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 132 203 IPR018866 -
Car01g00687 840 Gene3D Cupin 424 809 - -
Car01g00687 840 SUPERFAMILY Clavaminate synthase-like 441 831 - -
Car01g00687 840 SMART cupin_9 542 800 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00687 Car-Chr1 5708542 5713469 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Car01g00687 JmjC 1.3e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00687 K15601 K21989 gmx:100801772 1115.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00687 01 5708542 5713469 Car01g00687 01 5708542 5713469 ECH
Car07g00103 07 956422 962198 Car01g00687 01 5708542 5713469 PCT