Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00681 ATGGCCACTTCAACCAATTTTGTTCTCCTATTTCTAATCACATACTTAATTCTACCAACCTTACTAGCTAATTCAGATTCAAAAAAAAAGCATAACAACCTATCAGATTTTAATATTCCAAGCTACAACAACATTCCCAATAGTGACCAAAAAAATGATAATGTGATGAACACAATAGACTCATGCTGGAGAAAAAAAACAAATTGGGCTTCAAACCGCCAATCACTAGCAGATTGTGCAATTGGATTTGGAAAAGATGCAATTGGAGGAAAATATGGTGACATATATGAAGTAACTGACCCTTCTGACGACCCAATAAGCCCAAAACAAGGTACACTTCGTTATGGTGTAATCCAAACAGAACCACTTTGGATAACATTTGCAAATGACATGGTAATTAAATTGAAGAACGAGCTTATAGTAAATAGTTACAAAACAATTGATGGTAGAGGAGCTAAAGTTGAAATTGGAAATGGTCCTTGTATTACAATACAAGGTGTTAGTCATGTGATTGTGCATGGAATTAGTGTTCATGATTGTAAACCGGGTATGGCTGGTATCGTTAGAAGTACTATTGAACATGTTGGATATCGTGAAGGTTCTGATGGTGATGCTATTACTGTTTTTGCTTCTTCTAATGTTTGGATTGATCATTGTTTTTTGGCTACTTGTGCTGATGGCCTTGTTGATGTTACTCATGCATCTACTGCTGTTACTGTCTCAAATAATTACTTCACTCGCCATGACAAAGTGATGCTGCTAGGACATAATGATGATTACAGCGCGGATAGAATAATGAAAGTAACAGTAGTTTATAACCGCTTTGCCACTGGCCTAATAGAAAGAATGCCAAGGGTAAGATATGGTTATGCCCATGTTGTAAACAACAGATATGACGAGTGGCTCATGTATGCCATTGGTGGTAGTGCTGATCCTACCATTTTCAGTCAAGGAAACTACTTTTTAGCTTCCAAAAATTCTGATGCAAAACAGGTTACAAAGAGGGAAACTGATGGAAAATGGAATAATTGGAAATGGAGGAGTTATGGAGATGAATTCTTAAATGGTGCTTATTTTGTGCCATCTGGGTATGGAAGTTGTGCTCCCTTATattcatctgctcaaaactttgatgctgctcaagcatctatgGTGCCTTTATTAACACTCAATGCAGGACCTTTGGATTGTTCTGTTAACAAAGCATGTTAA 1212 0.3556 MATSTNFVLLFLITYLILPTLLANSDSKKKHNNLSDFNIPSYNNIPNSDQKNDNVMNTIDSCWRKKTNWASNRQSLADCAIGFGKDAIGGKYGDIYEVTDPSDDPISPKQGTLRYGVIQTEPLWITFANDMVIKLKNELIVNSYKTIDGRGAKVEIGNGPCITIQGVSHVIVHGISVHDCKPGMAGIVRSTIEHVGYREGSDGDAITVFASSNVWIDHCFLATCADGLVDVTHASTAVTVSNNYFTRHDKVMLLGHNDDYSADRIMKVTVVYNRFATGLIERMPRVRYGYAHVVNNRYDEWLMYAIGGSADPTIFSQGNYFLASKNSDAKQVTKRETDGKWNNWKWRSYGDEFLNGAYFVPSGYGSCAPLYSSAQNFDAAQASMVPLLTLNAGPLDCSVNKAC 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00681 403 PANTHER PECTATE LYASE 18-RELATED 45 402 IPR045032 GO:0030570
Car01g00681 403 SUPERFAMILY Pectin lyase-like 56 394 IPR011050 -
Car01g00681 403 PANTHER PECTATE LYASE 16-RELATED 45 402 - -
Car01g00681 403 SMART amb_all 130 327 IPR002022 -
Car01g00681 403 Pfam Pectate lyase 136 321 IPR002022 -
Car01g00681 403 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Car01g00681 403 PRINTS Pollen allergen Amb family signature 102 127 IPR018082 -
Car01g00681 403 PRINTS Pollen allergen Amb family signature 138 154 IPR018082 -
Car01g00681 403 PRINTS Pollen allergen Amb family signature 202 223 IPR018082 -
Car01g00681 403 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Car01g00681 403 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Car01g00681 403 PRINTS Pollen allergen Amb family signature 344 368 IPR018082 -
Car01g00681 403 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Car01g00681 403 Gene3D - 56 396 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00681 Car-Chr1 5682604 5684401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00681 10 403 Polysaccharide Lyase AT4G22080 62.944 0.0 534
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00681 01 5682604 5684401 Car01g00681 01 5682604 5684401 ECH
Car07g00106 07 984592 986457 Car01g00681 01 5682604 5684401 PCT