Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00679 ATGGACAAAGGATGGGGACTCGCTCTTGATACTTCACCATCCTCTCCAATTCCATCTCTCCCTTTTCTACCTTCCAAACAACCATCTGCATCCTCATTCAACACCAACGATAGAATGTTTCCCATTTTTGGATTCCCAGTCAACCTTAGCCGCAACACTTCCAACGCCGAAGACGGTGACCGGAAAGTAATCGGCGAAGTCGATTTCTTCTCAGAAAGAAACAATAAGCCTTCACATGTTAAATCTAACAACACCGTCAAAAAGGAGATTATTACAACCGATGAAAAGTCTCCCATATCTAATATCCACGTAAACACTGGATTACAACTTGCAAACACCGGGAGCGATCAATCTGTAGTAGACGATGCTGTTTCATCTGATGCCGAAAATAAGCGAGCCAAAACCACCGAGCTTGCACAGTTGCAAGTCGAGCTTCAACGGATGAATTCAGAAAACAAAAAACTGAAAGAGATGCTAAGTCATGTTACTGGTAACTACACGGCTTTGCAGATGCAACTCGTCGCATTAATGCAAAAGAATCACCATACCGCAAATGAGGTTGTTAATGCAAAAAGTGAGGAGAAAAAGCAAGGTGTTGGTGGAGGAAGGGTACCAAGACAATTTCTTGAGATAGGTCCAAGTGGTACAGCAGCAGAAGTAGATGATCAAGTATCGAATTCTTCATCTGATGAAAGAACTAGATCAAACACACCTCAGATCGAAGCAGCTGGAACAACAAGAGATCACATAGTTAGAAATAACAATGGTAAAAATGGTAGGGAAGAAAGTTCGGATTCAGAATCACAAGGTTGGGGTTCCAATAAGGTTCAGAAAATATTGAACCCTTCCAATCCTATAGATCAATCTACAACAGAAGCCACAATGAGAAAAGCTCGTGTCTCTGTTCGCGCTCGATCAGAAGCTTCAATGATCAGTGATGGGTGTCAATGGAGAAAATATGGACAAAAAATGGCTAAAGGAAATCCATGTCCAAGAGCATATTATAGATGCACTATGGCAGTTGGTTGTCCAGTTCGCAAACAAGTTCAACGTTGTGCTGAGGACACAACCATTTTGGTAACAACATATGAAGGAACACATAACCATCCACTACCACCAGCAGCTATGGCTATGGCATCAACAACTTCAGCAGCTGCAAGTATGTTACTATCAGGTTCAATGTCAAGTGCAGATGGAATCATGACACCAAATTTGTTAGCAAGAGCTATTCTTCCTTGTTCAACAAGCATGGCAACACTTTCAGCTTCAGCACCATTCCCTACTGTTACATTAGATCTCACACAaaactcaaattcaaatccaaatccaaattcaaatccattgcaatttcaaaGACCTCATGCACCATTTCAAGTACCCTTTTTCCAAGGACAGCCTCAGAATTTTGCACAAGCAGCAGCAATTTATAATCAATCTAAATTCTCTGGTCTTCAATTGTCTCAAGAAATTGGTTCTTCTCATTTGACAACACAAGCTTCAAGTTCAACACAACCACCACCTCAACATCCTTCCTTGGCTGACTCTGTCAGCGCCGCTACCGCAGCCATCACCGCCGATCCTAATTTCACTGCGGTTCTCGCTGCCGCTATCTCCTCTATCATTGGTGGTGCTCATGGAaacaacaacaacaattccaacaacaacagcagcaGAAATACAATTAGTAGTTTTTCAGGAAACTAA 1704 0.4032 MDKGWGLALDTSPSSPIPSLPFLPSKQPSASSFNTNDRMFPIFGFPVNLSRNTSNAEDGDRKVIGEVDFFSERNNKPSHVKSNNTVKKEIITTDEKSPISNIHVNTGLQLANTGSDQSVVDDAVSSDAENKRAKTTELAQLQVELQRMNSENKKLKEMLSHVTGNYTALQMQLVALMQKNHHTANEVVNAKSEEKKQGVGGGRVPRQFLEIGPSGTAAEVDDQVSNSSSDERTRSNTPQIEAAGTTRDHIVRNNNGKNGREESSDSESQGWGSNKVQKILNPSNPIDQSTTEATMRKARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDTTILVTTYEGTHNHPLPPAAMAMASTTSAAASMLLSGSMSSADGIMTPNLLARAILPCSTSMATLSASAPFPTVTLDLTQNSNSNPNPNSNPLQFQRPHAPFQVPFFQGQPQNFAQAAAIYNQSKFSGLQLSQEIGSSHLTTQASSSTQPPPQHPSLADSVSAATAAITADPNFTAVLAAAISSIIGGAHGNNNNNSNNNSSRNTISSFSGN 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00679 567 MobiDBLite consensus disorder prediction 493 513 - -
Car01g00679 567 MobiDBLite consensus disorder prediction 1 20 - -
Car01g00679 567 Pfam WRKY DNA -binding domain 313 370 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car01g00679 567 Gene3D WRKY domain 296 373 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car01g00679 567 MobiDBLite consensus disorder prediction 432 452 - -
Car01g00679 567 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 39 554 IPR044810 GO:0003700
Car01g00679 567 PANTHER WRKY TRANSCRIPTION FACTOR 6 39 554 - -
Car01g00679 567 MobiDBLite consensus disorder prediction 219 252 - -
Car01g00679 567 ProSiteProfiles WRKY domain profile. 306 372 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car01g00679 567 Coils Coil 131 165 - -
Car01g00679 567 MobiDBLite consensus disorder prediction 265 294 - -
Car01g00679 567 MobiDBLite consensus disorder prediction 545 567 - -
Car01g00679 567 SUPERFAMILY WRKY DNA-binding domain 304 372 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car01g00679 567 SMART WRKY_cls 311 371 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car01g00679 567 MobiDBLite consensus disorder prediction 189 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00679 Car-Chr1 5666373 5669334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00679 1 553 WRKY Transcription Factor Family AT1G62300 49.507 2.16e-152 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Car01g00679 WRKY 5.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00679 - - ccaj:109803638 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00679 01 5666373 5669334 Car01g00679 01 5666373 5669334 ECH
Car01g02289 01 48643962 48648075 Car01g00679 01 5666373 5669334 ECH
Car06g03281 06 61421248 61423327 Car01g00679 01 5666373 5669334 ECH