Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00677 ATGGATTGGATGAGAGGCAGAACCATTGGCCGTGGCTCAACCGCCACCGTCTACATAGCCGAGAATCGACATTCCGGCGAACATTTTGCGGTCAAATCTACAGAGCTTCACCGCTCGGAGTTTCTGAAGAGAGAACAAGAGATTCTCTCGAAGCTTAATTGTCCTGAAATTGTGGACTACCATGGTTGTGATGTCACGTTGGAAAACGGTGTTGAGTTTTTCAACTTGTTCATGGAGTATGCACCTTATGGAACTCTCTCCGATGAACTACGCAACAGAAATGGTGGAAATGGAATGGAAGAAGCTTTGGTCAAGTTCCACGCGCGCCGGATTTTATTTGGACTTCACTATCTTCATTCAAATGGGATAGTACATTGCGATTTGAAGGGACAGAACGTCTTGTTGACGGAACATGGTGCGAAAATCGCTGATTTTGGTTGTGCTCGGAGGGTTGAGGAGGAGGAGATGCTAATTTCCGGTACGCCGGCTTACATGGCACCGGAGGTGGCGCGTGGGGAGGAGCAAGGGTTTTCTGCTGATGTGTGGGCTTTGGGATGTACTGTTTTGGAGATGATCACCGCGAAAATGCCGTGGCAGGGTGTTTCTGACCCTGCGGCGGTTTTGTATCGAATTGGATTCTCCGGCGATGTGCCGGAGATTCCTAACTCTGTTTCGGAACAGGGGAAGGATTTTTTGAGGAAATGTTTGAAGAGAGATCCAAACGAGAGGTGGTCGGTGATTGAGCTTCTTGGACATGAATTTGTTGGAGAGTTTAAGGAATTGGTGTTTGATTCGGAAACTCCGACGACTGTGTTGGAACGAAGTATTTGGGACTGTTTGGAAAAAACTCAGGAGGTGGGTCCCACATTTGATTGTTGTTCCTCGGATTCTTCGAATCCTTTAGACAGAATTCAGAGGTTGTGTTCTGATGAGGCTGTTTGGGAATTTGATAATGATGATGAATGGATTACAGTGAGAAGTAATGATATGGAGTTTAATGCATTGTCGTTAGGAGAAATGGAAGATTATGAATCAGACACTGTTTGTGTAGTTGGTGATCATGAGATTGAGATTGAGATTGATTTGGAAAATTTTTATGAACCAGAAATTGTAATTGAATTGAGTAGATGGAATGCTATTGTTGATTATTGGTGTCTTAGTAACTGCAATTGTGTTAGTGATTTTTCCAAACCTAGTAAGCCAGCTAGTATATTAGTTATGGGGAACTTGATTGCTGCTCAAGTTATTGCAGGAGTAGATTGGAAACATAGTTTAGTTATAGGGAACATGTATTGGTACATAACAATCTTCAATACTACATTGGCAAATAACAGCTTGACACCGCATCTTAGAAACCGTTCTTCTTTAAGAACATATTATACCAATAATATTCTTTTCGTAACACTAGTGAGGGTTCTACTTGGAACCCACTAA 1434 0.4275 MDWMRGRTIGRGSTATVYIAENRHSGEHFAVKSTELHRSEFLKREQEILSKLNCPEIVDYHGCDVTLENGVEFFNLFMEYAPYGTLSDELRNRNGGNGMEEALVKFHARRILFGLHYLHSNGIVHCDLKGQNVLLTEHGAKIADFGCARRVEEEEMLISGTPAYMAPEVARGEEQGFSADVWALGCTVLEMITAKMPWQGVSDPAAVLYRIGFSGDVPEIPNSVSEQGKDFLRKCLKRDPNERWSVIELLGHEFVGEFKELVFDSETPTTVLERSIWDCLEKTQEVGPTFDCCSSDSSNPLDRIQRLCSDEAVWEFDNDDEWITVRSNDMEFNALSLGEMEDYESDTVCVVGDHEIEIEIDLENFYEPEIVIELSRWNAIVDYWCLSNCNCVSDFSKPSKPASILVMGNLIAAQVIAGVDWKHSLVIGNMYWYITIFNTTLANNSLTPHLRNRSSLRTYYTNNILFVTLVRVLLGTH 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00677 477 PANTHER MAP KINASE KINASE KINASE 1 346 - -
Car01g00677 477 Gene3D Transferase(Phosphotransferase) domain 1 2 298 - -
Car01g00677 477 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 346 - -
Car01g00677 477 Pfam Protein kinase domain 5 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00677 477 SUPERFAMILY Protein kinase-like (PK-like) 2 256 IPR011009 -
Car01g00677 477 SMART serkin_6 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00677 477 ProSiteProfiles Protein kinase domain profile. 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00677 477 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Car01g00677 477 CDD STKc_MAPKKK 2 255 - -
Car01g00677 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00677 Car-Chr1 5642959 5646456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00677 1 328 MAP Kinase Kinase Kinase AT1G05100 49.563 3.45e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Car01g00677 Pkinase 4.6e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00677 K20716 - gmx:100802174 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00677 01 5642959 5646456 Car01g00677 01 5642959 5646456 ECH
Car01g02290 01 48671847 48673084 Car01g00677 01 5642959 5646456 ECH
Car06g03280 06 61395244 61396533 Car01g00677 01 5642959 5646456 ECH