Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00661 ATGAATCAAaagaggcaagaagaagaagaagaaggaaatgaagaaACTCAAAGTGAAAGTGAATCAAAGCAAATAGTGGCAATATCTCGGCCTCTAATACAAACTCCAGGTGCTTCTGCTTTTTCATGTTACCTAAACAGAGACAAACTTCCAAAATATTTTCGCCACAGCATTCTCcaacaacaaaaacaacaagaacTGAAGAAAAAACTTGAAAACTTTTGGATAAACCAAAACCATGAAATTGAAGAGAGCAACAATTTGGGAAATCACTGTTTGCCTTTAGCAAGGATTAAGAAAGTGATGAAATCTGACGAACAAGTGAGTATGATATCAGCAGAGGTGCCTGTCCTGTTTGCTAAGGCATGTGAAATGTTTATTATGGAAATGACAATGAGATCTTGGGCTCATGCTGAGATGAACCAAAAGAAAACAATTCAAAAGAGTGACATTGCATCTGCAATCTCAAGTACTGATGTTTTTGATTTCTTGGTTGATATTGTTCCAAGGGAAGAAGACACAATGGATCATGAAATTTTTAGAAGAAGAGAAAGTGTTCCTTATTATTATGTCCCTTTGCCACCTCATCATGCTGCTCCTCCAGGAATGTTTATGGGAACTCCTGAACTGCTTCCAAACCCAAATCAAGAAAATGGTGATTCTTCTGATTGA 672 0.3393 MNQKRQEEEEEGNEETQSESESKQIVAISRPLIQTPGASAFSCYLNRDKLPKYFRHSILQQQKQQELKKKLENFWINQNHEIEESNNLGNHCLPLARIKKVMKSDEQVSMISAEVPVLFAKACEMFIMEMTMRSWAHAEMNQKKTIQKSDIASAISSTDVFDFLVDIVPREEDTMDHEIFRRRESVPYYYVPLPPHHAAPPGMFMGTPELLPNPNQENGDSSD 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00661 223 MobiDBLite consensus disorder prediction 1 25 - -
Car01g00661 223 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 93 155 IPR003958 -
Car01g00661 223 SUPERFAMILY Histone-fold 58 164 IPR009072 GO:0046982
Car01g00661 223 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA 24 175 IPR027170 GO:0003700|GO:0006355|GO:0016602
Car01g00661 223 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 24 175 - -
Car01g00661 223 Gene3D Histone, subunit A 54 170 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00661 Car-Chr1 5520109 5522335 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00661 74 213 CCAAT-HAP5 Transcription Factor Family AT3G48590 55.102 1.42e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Car01g00661 CBFD_NFYB_HMF 2.3e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00661 K08066 - jre:109005883 174.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00661 01 5520109 5522335 Car01g00661 01 5520109 5522335 ECH