Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00656 ATGTCAACGGTGTACGTTTTAGAACCGCCGACGAAGGGAAAGGTGGTCGTGAACACCACCCGCGGCCCTATTGACATTGAGCTATGGCCTAAAGAAGCTCCCAAAGCCGTTAGGAACTTCGTTCAACTCTGCCTCGAAGGTTACTACGACAACACCATCTTCCACCGTATCATCAAAGATTTCCTCGTTCAGTGTGGCGACCCCACCGGCACGGGCACCGGAGGTGAAAGTATTTATGGAGATGTTTTTGCTGACGAGTTTCATTCGCGTATCAAATTCAAGCATAGAGGTTTGGTTGCAATGGCTAATGCTGGAAACCCTAATTCTAATGGAAGTCAGTTTTTCATTACTCTTGACCGGTGTGACTGGCTTGATCGGAAGCATACCATTTTTGGAAAGGTGACAGGAGATACAATGTATAATTTATTGCGACTTGGTGAAGCTGAGACTGATAAGAGCGACCGGCCTTTAGATCCAGCCCCGAGGATATTATCAGTTGAGGTGTTGTGGAACCCATTTGAAGACATTGTTCCAAGAACACTTCAGAAATCTCAGACTAAAGCTACACGTGATACGGATGGTAAAGATGCAAAGAAGAAAGGTGTAAAAAATTTGAACTTGCTTTCATTTGGGGAGGAAACTGAAGAAGAGGAAAAAGAATTGGCATTGGTGAAGAAAAAGATTGTGAGCAGTCATGATGTCTTGAACGATCCCCGTCTTCTAAGAGATGAAAATCTTAATAATGAATTGAGTTCTTCTGACAGTAAAGCAAAAAGGAATCTGCAGTTATCTGTAAGGGATGCACTTAACTCAAAGAAAGAAGAACCTCACAAAGATTCAGAAGCTGATAAGTTGGCCCATCTTAATTCCAGCGATGACGATGAAGCAGATTTTGATGCAAGAATGCGCATGCAAATACTCAAAAAGCGGAAGGAACTGGATGATCTCCCTCACAAACCAAAGTCGCAAAATGGAAGGTCCAGGTCTAGGTCCAGTCCAGACAAAAATACTGTGTCAAGAGCCAGCTTCTGGCAAAACTTGAAAAATTTAAAACCTCTTTATCATCAAAGGAGACACCTACAACTGCTGAATCTAAACATGTTAATGATGAGGAATTATCTGACTGGAAAAGTGTTAGCTTAA 1143 0.4243 MSTVYVLEPPTKGKVVVNTTRGPIDIELWPKEAPKAVRNFVQLCLEGYYDNTIFHRIIKDFLVQCGDPTGTGTGGESIYGDVFADEFHSRIKFKHRGLVAMANAGNPNSNGSQFFITLDRCDWLDRKHTIFGKVTGDTMYNLLRLGEAETDKSDRPLDPAPRILSVEVLWNPFEDIVPRTLQKSQTKATRDTDGKDAKKKGVKNLNLLSFGEETEEEEKELALVKKKIVSSHDVLNDPRLLRDENLNNELSSSDSKAKRNLQLSVRDALNSKKEEPHKDSEADKLAHLNSSDDDEADFDARMRMQILKKRKELDDLPHKPKSQNGRSRSRSSPDKNTVSRASFWQNLKNLKPLYHQRRHLQLLNLNMLMMRNYLTGKVLA 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00656 380 MobiDBLite consensus disorder prediction 268 297 - -
Car01g00656 380 PANTHER SPLICEOSOME-ASSOCIATED PROTEIN CWC27 HOMOLOG 5 203 - -
Car01g00656 380 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Car01g00656 380 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Car01g00656 380 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Car01g00656 380 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Car01g00656 380 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Car01g00656 380 CDD cyclophilin_CeCYP16-like 8 180 - -
Car01g00656 380 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 168 IPR002130 GO:0000413|GO:0003755
Car01g00656 380 Gene3D - 2 183 IPR029000 -
Car01g00656 380 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 159 IPR002130 GO:0000413|GO:0003755
Car01g00656 380 SUPERFAMILY Cyclophilin-like 14 185 IPR029000 -
Car01g00656 380 MobiDBLite consensus disorder prediction 309 338 - -
Car01g00656 380 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 5 203 IPR044666 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00656 Car-Chr1 5470041 5479657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00656 9 173 U-box Gene Family AT5G67530 46.061 2.32e-41 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00656 K12737 - gmx:100793148 526.168