Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00655 ATGAGTGACTCAAAGCATGTAACCACTACAAACAATGCCCAATATGTTTCAGATATGAAACGTGAGGCTGTGCTGGAATTCTCCCCGGAAGAGGAAGATATTGTTGCAAAAATGTTTAGATTGGTTGGAAAAAGATGGCATCTCATTGCTGGGAGAATCCCTGGAAGAACCGCAGAAGAGATTGAAAAGTTTTGGACTTCAAAGGGCTCTTCATCCAAAGTTAATTAA 228 0.4035 MSDSKHVTTTNNAQYVSDMKREAVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEEIEKFWTSKGSSSKVN 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00655 75 CDD SANT 26 65 IPR001005 -
Car01g00655 75 ProSiteProfiles Myb-like domain profile. 27 65 IPR001005 -
Car01g00655 75 PANTHER AND CPC, PUTATIVE-RELATED 10 73 - -
Car01g00655 75 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 10 73 - -
Car01g00655 75 Gene3D - 26 68 - -
Car01g00655 75 SUPERFAMILY Homeodomain-like 27 67 IPR009057 -
Car01g00655 75 SMART sant 23 71 IPR001005 -
Car01g00655 75 Pfam Myb-like DNA-binding domain 26 65 IPR001005 -
Car01g00655 75 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 73 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00655 Car-Chr1 5453449 5454929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00655 27 67 MYB Transcription Factor Family AT5G52600 48.780 2.49e-12 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Car01g00655 Myb_DNA-binding 3.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00655 - - mtr:MTR_2g023100 120.938