Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car01g00639 | ATGGGTATTTCCTGGAGTAGCAGCAGAAGAAGAAACAATTTCATTCACAACccaccgccaccacctcaacttccaccgccgccaccTTATTATTACTCTACGGAATCACATCCACCACTTCCACCTCAGCAAAATTACTATTTACCCTCAACAACTACCCCTTACACCACAGCCTATGTCACTACTccaccaccaccaccaccaccaccTCAGAGTCAGACCCATCACCCCTTCTACTATTCCAATCCCAATTGCTACACCAATTATGTCAATCGACTTCAATACCATCCTTACTATCCcaatcaacaacaacaacaacaacaaTGGGCCCCACCTCCCCCTTCTTCCTCTACCGCTCCACCTCCCTATGTGGATCATCAAACTGCTAAGAAGATTAGGAATAATGTTAATGTTCATAAACATACTTTGCGCCTTGACCTCGATCACCAACACCCTGATCATCACCTTGTTTCTTTCGTTTTCGATGCTGTCTACGATGGCAGCATTACTATCTTCTACTTTGCAAAGGAAGAAGAGAAATGTAAGTTTGTTCCCCAATTTCCCGATGCATTTGAGCCAGTCAAAGTTCCCTTTCAGAAAGGAGTTGGGCAGAAATTTTCCCAGCCGTCAGGAACAGGGATTGACCTCGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCCTCACCTGGAGAAGATGTCTTTCCTCTTGTAATATGTGCTGAAACATGTTTGGAAACTCCCTCAGAAAACAAAACTCCTGACGATTCCAAGCTAGATGCAACTCCTCACAAGCAAATAACTCAAGCTGTCTTGGAGAAAAGTAATGGCGATGGTGCTTTTCAGATAAAAGTAGTTAGACAGATTCTTTGGATTGATGGTGTTCGTTATGAGTTGAGAGAGCTATATGGAATAGGAAGCTCAACAGCTGCAGATTTTGATGACAGTGATACCGGGAAGGAGTGTGTGATATGCATGACAGAACCAAAGGATACAGCTGTCTTACCTTGTCGACATATGTGTATGTGCAGCGAATGTGCAAAAGCTCTGCGGGTTCAATCCAACAAATGCCCTATATGCCGTCAGTCCATCGAGGAACTTATGGAGATTAAGGTGAACAATAGTGATCGATGA | 1131 | 0.3988 | MGISWSSSRRRNNFIHNPPPPPQLPPPPPYYYSTESHPPLPPQQNYYLPSTTTPYTTAYVTTPPPPPPPPQSQTHHPFYYSNPNCYTNYVNRLQYHPYYPNQQQQQQQWAPPPPSSSTAPPPYVDHQTAKKIRNNVNVHKHTLRLDLDHQHPDHHLVSFVFDAVYDGSITIFYFAKEEEKCKFVPQFPDAFEPVKVPFQKGVGQKFSQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETCLETPSENKTPDDSKLDATPHKQITQAVLEKSNGDGAFQIKVVRQILWIDGVRYELRELYGIGSSTAADFDDSDTGKECVICMTEPKDTAVLPCRHMCMCSECAKALRVQSNKCPICRQSIEELMEIKVNNSDR | 376 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car01g00639 | 376 | ProSiteProfiles | Zinc finger RING-type profile. | 321 | 360 | IPR001841 | - | |
| Car01g00639 | 376 | SMART | ring_2 | 321 | 359 | IPR001841 | - | |
| Car01g00639 | 376 | MobiDBLite | consensus disorder prediction | 101 | 125 | - | - | |
| Car01g00639 | 376 | PANTHER | MAHOGUNIN | 1 | 375 | IPR045194 | GO:0061630 | |
| Car01g00639 | 376 | MobiDBLite | consensus disorder prediction | 15 | 36 | - | - | |
| Car01g00639 | 376 | CDD | mRING-HC-C3HC5_MGRN1_like---blasttree | 320 | 360 | IPR045195 | - | |
| Car01g00639 | 376 | SUPERFAMILY | RING/U-box | 320 | 366 | - | - | |
| Car01g00639 | 376 | MobiDBLite | consensus disorder prediction | 1 | 77 | - | - | |
| Car01g00639 | 376 | Pfam | Zinc finger, C3HC4 type (RING finger) | 319 | 365 | - | - | |
| Car01g00639 | 376 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 306 | 370 | IPR013083 | - | |
| Car01g00639 | 376 | MobiDBLite | consensus disorder prediction | 59 | 74 | - | - | |
| Car01g00639 | 376 | MobiDBLite | consensus disorder prediction | 37 | 58 | - | - | |
| Car01g00639 | 376 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED | 1 | 375 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car01g00639 | Car-Chr1 | 5304539 | 5309682 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car01g00639 | 123 | 376 | C3H Transcription Factor Family | AT3G06140 | 63.922 | 1.77e-113 | 333 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car01g00639 | - | - | gmx:100786054 | 473.396 |