Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00637 ATGTCTCACATAGCCGTCGAGAGGAACAGGAGAAGACAAATGAATGAACATCTCAAAGTTTTAAGGTCCTTGACCCCTTCTTTCTATATTAAAAGGGGAGACCAAGCATCAATAATAGGGGGAGTTATAGAATTCATCAATGAATTGCACCAAGTTCTTCAATCTTTGGAATCACAAAAGAGAAGGAAGAGTTTAAGCCCTAGCCCTGGTCCAAGTCCAAGAACACTTCAACCAACACTTCATCAATTTGATATCTCCTCGGGAGGAATTGATACTAATGCTTTCAAGGAACTAGGTGCAAGTTGCAATTCTTCAATTGCGGATGTAGAAGTGAAAATTTCAGGTCCAAATGTGATTTTGAGAGTGATTTCTCATAGAATTCAAGGTCAAGTTTCAAGGATTATAACTATTTTAGAAAATCTATCATTTGAAGTCCTTCATCTTAACATCAGTAGCATGGAGGAGACCGTCCTATATCAATTTGTAGTCAAGATAGAGTTGGGATGTCAACTAAGTTTGGAGGAACTTGCTATGGAAGTACAACAAAGTTTTTGTTCAGAGGCTATGAAGTTGATTGCTGTGTGA 585 0.3795 MSHIAVERNRRRQMNEHLKVLRSLTPSFYIKRGDQASIIGGVIEFINELHQVLQSLESQKRRKSLSPSPGPSPRTLQPTLHQFDISSGGIDTNAFKELGASCNSSIADVEVKISGPNVILRVISHRIQGQVSRIITILENLSFEVLHLNISSMEETVLYQFVVKIELGCQLSLEELAMEVQQSFCSEAMKLIAV 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00637 194 SMART finulus 4 55 IPR011598 GO:0046983
Car01g00637 194 PANTHER TRANSCRIPTION FACTOR FAMA 1 190 IPR044283 GO:0003700|GO:0010052
Car01g00637 194 Gene3D - 1 64 IPR036638 GO:0046983
Car01g00637 194 MobiDBLite consensus disorder prediction 59 78 - -
Car01g00637 194 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Car01g00637 194 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Car01g00637 194 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 68 IPR036638 GO:0046983
Car01g00637 194 PANTHER TRANSCRIPTION FACTOR MUTE 1 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00637 Car-Chr1 5267871 5269920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00637 1 187 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 66.154 3.84e-82 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car01g00637 HLH 6.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00637 - - mtr:MTR_2g022280 348.206