Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00622 ATGGCGAATTTCACCCCTttctcttcttcttcaacttcaactcctccttctttctcacacatttcagctccatcttcttctGGGCCTTTCGATGATGACTCTTCTGAGGATTCTTGCAGTATATGCTTAGAGTCCTTCGGCGTTCATGACCCATCAACTGTAACCTGTTGCAAACATGAATATCACCTGCACTGCATTCTTGAATGGTCACAAAGAAGCAAAGAGTGCCCAATATGTTGGCAATCACTTGCTCTGAAAGACCCTGCCAGCCAAGAGCTTCTGGCCGCTGTGGAGGCCGAAAAATGCTTACGATTAAGAAATGTTGATTCATCCTCATTCACTAGCTCTCGTGTCCCCTTTGCAAGTTTTAATAGTGACCATGATGATTCTTGCTCCGATGACTCTGATTTTGATGAGCAAATTATGCAGCACCTAGTTGCTGCTGCAAGTAGAGCTCGTTTTGTTCAGAGACAGAAAAGACAGGGATCGTCTGGAGCAGGTCCATCAGAGATTCTTGTTTTTAACTCTTCTGCACATGTATCTGCGATGCAACCAACACTTACAACTTCATCAGCCGGTGGTAGTTCACCAACCACCAGTCTACCATTGACGGTTGAGACTCCTACTGAGGTTGCAAGAAATATTAGTCCCGAGACCAATGTCACTTACAGACCCAGAGTTCTTTACAGTCAGTCATCACCTCAAGGTGGGAGGAAACTGAACACTTCTGAGATGTTCTCCTTTCCCGAATCCATCAAATCGAAATTTTCTGCTGCTTCAGCCAGATATAAGGAATCAATTTCTAAAAGTACCCGCGGCCTTAAAGAGAAGTTACTTGCTCGTAATGTCACAGTGAAAGAGCTGAGTAAAGGTGTTCAGCGTGAAATGAATGCAGGCATAGCTGGAGTTTCACGTATGATAGAACGCCTTGATCTTGCCTCAAAAAGGTCCAATTCTCCTCTCATTCCTGTCCGTAATGGGGGAACATCATCATTTCCCGATGGGAAGTCCGTTGGCGAGAGAGGCATTGGGCATTCTCCAAATGAAGCAAGTGGAGGCGCGGTTCATAATTTTAGTTCAGATGCTCCCTTACACGTCTCTAGCACTGTTGCTGGTCGAATGGAAATTCCTCCATGTGTTCAGAGTGGACATGATGCTGTGAAGACTTAG 1170 0.4299 MANFTPFSSSSTSTPPSFSHISAPSSSGPFDDDSSEDSCSICLESFGVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKDPASQELLAAVEAEKCLRLRNVDSSSFTSSRVPFASFNSDHDDSCSDDSDFDEQIMQHLVAAASRARFVQRQKRQGSSGAGPSEILVFNSSAHVSAMQPTLTTSSAGGSSPTTSLPLTVETPTEVARNISPETNVTYRPRVLYSQSSPQGGRKLNTSEMFSFPESIKSKFSAASARYKESISKSTRGLKEKLLARNVTVKELSKGVQREMNAGIAGVSRMIERLDLASKRSNSPLIPVRNGGTSSFPDGKSVGERGIGHSPNEASGGAVHNFSSDAPLHVSSTVAGRMEIPPCVQSGHDAVKT 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00622 389 MobiDBLite consensus disorder prediction 318 348 - -
Car01g00622 389 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 374 - -
Car01g00622 389 MobiDBLite consensus disorder prediction 1 32 - -
Car01g00622 389 MobiDBLite consensus disorder prediction 186 207 - -
Car01g00622 389 MobiDBLite consensus disorder prediction 319 333 - -
Car01g00622 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 108 IPR013083 -
Car01g00622 389 SUPERFAMILY RING/U-box 34 86 - -
Car01g00622 389 SMART ring_2 39 79 IPR001841 -
Car01g00622 389 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 1 374 - -
Car01g00622 389 Pfam Ring finger domain 37 79 IPR001841 -
Car01g00622 389 ProSiteProfiles Zinc finger RING-type profile. 39 79 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00622 Car-Chr1 5140458 5149857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00622 33 87 C3H Transcription Factor Family AT4G00335 47.273 2.58e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00622 K19043 - gmx:100805449 422.935