Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00609 ATGATGCAGTCTGGACCTGGCATGGGgcaacagccgccacagcagtaccagcagcccccgcagcagcagcCGTACGTCATGATGCAACCTCAACTTCAGGCGCAGCCGGCCATGTGGTCTCAATCCGCCCAACCTCCTCAGCAGCCCGCCAGCGCCGATGAGGTACGTACTCTCTGGATCGGCGATTTGCAGTACTGGATGGATGAGAATTATCTCTACACCTGCTTCGGTCAAACCGGCGAGGTAACATCTCTGAAAGTGATTAGGAATAAGCAAACCAGTCAATCGGAAGGTTATGGTTTTATCGAGTTTAATTCTCGTGCTACTGCCGAGAGAGTGCTTCAGACATATAACGGAGCCATTATGCCTAATGGTGGCCAGAGCTACAGATTGAATTGGGCGACTTTCAGTGCTGGGGAGAGGTCGTCTAGACAGGATGATGGTCCTGATCATACCATTTTTGTTGGTGATTTGGCTGTTGATGTTACTGATTACCTTCTTCAGGAGACTTTTAGGGCTCGTTATAACTCTGTGAAGGGGGCAAAAGTTGTGATTGATAGGCTTACTTGTCGGTCTAAGGGTTATGGTTTTGTTAGATTTGCTGACGAGAGTGAACAAATTAGGGCTATGACTGAGATGCAAGGGGTTCTTTGTTCAACAAGGCCCATGAGGATTGGACCAGCCACTAATAAAAATCCTGCCGCCACCACTCAGCAGCCGAAAGCTTCATATCagaactctcaaggtgcacaaagcgagaatgatccaaataatacaactatttttgttggcaatttggatcctaatgtcactgatgatcatctgaggcaagttttcagccaatatggtgaattagtacatgtgaagattccatcaggcaagcgatgtgggtttgtccaatttTCGGACAGGAGCTGTGCAGAAGAGGCTATACGGGTTCTGAATGGAACTTTGTTGGGTGGACAAAATGTTCGTCTTTCATGGGGTCGCACTCCTTCAAACAAACAGACTCAGCAAGATCCAAACCAGTGGGGACCAGGTGGTGGATATTATGGATATCCTCAGAGTTTTGAAAATTATGGTTAtgctgctgctgctcctgctcctgctgGACAGGATCCCAATGTGTATGGAAGTTATCCAGGTTATGCAGGTTACCAAGCACCACAGCAGCAACAACAGCAAATGGGATATAGCTGA 1200 0.38 MMQSGPGMGQQPPQQYQQPPQQQPYVMMQPQLQAQPAMWSQSAQPPQQPASADEVRTLWIGDLQYWMDENYLYTCFGQTGEVTSLKVIRNKQTSQSEGYGFIEFNSRATAERVLQTYNGAIMPNGGQSYRLNWATFSAGERSSRQDDGPDHTIFVGDLAVDVTDYLLQETFRARYNSVKGAKVVIDRLTCRSKGYGFVRFADESEQIRAMTEMQGVLCSTRPMRIGPATNKNPAATTQQPKASYQNSQGAQSENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPSGKRCGFVQFSDRSCAEEAIRVLNGTLLGGQNVRLSWGRTPSNKQTQQDPNQWGPGGGYYGYPQSFENYGYAAAAPAPAGQDPNVYGSYPGYAGYQAPQQQQQQMGYS 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00609 399 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 14 395 - -
Car01g00609 399 MobiDBLite consensus disorder prediction 1 25 - -
Car01g00609 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 58 123 IPR000504 GO:0003723
Car01g00609 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 261 324 IPR000504 GO:0003723
Car01g00609 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 153 216 IPR000504 GO:0003723
Car01g00609 399 Gene3D - 8 148 IPR012677 -
Car01g00609 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 259 331 IPR000504 GO:0003723
Car01g00609 399 MobiDBLite consensus disorder prediction 329 349 - -
Car01g00609 399 MobiDBLite consensus disorder prediction 230 258 - -
Car01g00609 399 MobiDBLite consensus disorder prediction 224 258 - -
Car01g00609 399 CDD RRM1_SECp43_like 57 137 - -
Car01g00609 399 Gene3D - 233 364 IPR012677 -
Car01g00609 399 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 14 395 - -
Car01g00609 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 151 230 IPR000504 GO:0003723
Car01g00609 399 CDD RRM3_NGR1_NAM8_like 258 329 - -
Car01g00609 399 MobiDBLite consensus disorder prediction 385 399 - -
Car01g00609 399 MobiDBLite consensus disorder prediction 329 344 - -
Car01g00609 399 MobiDBLite consensus disorder prediction 379 399 - -
Car01g00609 399 Gene3D - 150 226 IPR012677 -
Car01g00609 399 SUPERFAMILY RNA-binding domain, RBD 142 246 IPR035979 GO:0003676
Car01g00609 399 CDD RRM2_SECp43_like 150 229 - -
Car01g00609 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 136 IPR000504 GO:0003723
Car01g00609 399 SUPERFAMILY RNA-binding domain, RBD 241 355 IPR035979 GO:0003676
Car01g00609 399 SUPERFAMILY RNA-binding domain, RBD 34 135 IPR035979 GO:0003676
Car01g00609 399 SMART rrm1_1 260 327 IPR000504 GO:0003723
Car01g00609 399 SMART rrm1_1 152 226 IPR000504 GO:0003723
Car01g00609 399 SMART rrm1_1 57 132 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00609 Car-Chr1 5068384 5072833 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00609 58 319 Eukaryotic Initiation Factors Gene Family AT4G34110 28.464 1.32e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00609 - - gmx:100801562 578.17