Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00601 ATGCATCCTGATCAGAGAAAAAAGTCATCTGTGGATGTAGATTTCTTTACTGAATATGGTGAAGGGAGCAGATACAAAATAGAGGAAGTGATTGGTAAAGGAAGCTATGGTGTTGTTTGCTCTGCATATGATACACACACTGGAGAAAAGGTTGCTATAAAGAAAATCAATGACATATTTGAACATGTATCAGATGCCACTCGCATTCTTCGTGAGATTAAGCTTCTTAGACTTCTACGGCATCCGGATATCGTGGAGATCAAGCATATTTTGTTACCTCCTTCAAGAAGGGAATTCAAAGATATATATGTTGTTTTTGAACTTATGGAATCTGATTTACATCAGGTCATCAAAGCAAATGATGATCTAACACCAGAGCATTACCAGTTTTTCCTCTATCAGCTTCTACGAGGATTGAAGTATATACACACAGCAAATGTTTTTCACCGAGATTTAAAGCCAAAAAACATTTTGGCAAATGCTGATTGCAAACTGAAGATTTGCGACTTTGGTCTTGCCAGAGTAGCTTTTAATGATACACCTACTGCTATATTCTGGACAGACTATGTTGCAACAAGGTGGTATAGGGCTCCTGAGTTGTGTGGATCCTTTTTCTCCAAGTATACACCGGCTATAGACATATGGAGCATTGGCTGCATTTTCGCAGAACTTTTAACTGGAAAACCTCTTTTCCCCGGCAAGAATGTTGTCCATCAACTGGACATCATGACTGATTTTCTTGGAACACCATCTCCTGACGCCATTGCAAGGGTACGGAATGAGAAAGCTCGCAGATACTTGAGCAGCATGCGCAAGAAGAAGCCAGTTCCTTTCTCACAGAAATTTTCTAATGCAGACCCCCTTGCTCTACGATTGTTAGAAAGAATGCTGGCATTTGAGGCTAAGGATCGGCCTACTGCTGAAGAGGCCCTAGCAGATCCATATTTTAAAGGCTTGGCCAAGGTCGAGAGAGAACCTTCTGCTCAGCCAGTTACTAAGATGGAATTTGAATTTGAGAGGCGGAGGATAACAAAGGAAGATGTACGAGAGCTTATATACCGAGAAATATTGGAGTACCATCCAAAGATGTTAAAGGAATTTCTAGAAGGAGCAGAGCCAACGGGTTTCATGTATCCAAGGTTTTGTATAAAACATGTACCCAAATTTTTGTTTCACATGAATCACATCTCAAATCTTTTGCATTGGTTAAAGCACTTTATGAGCTCATTTAATCATTTCTTTTGCTTGATATTGGTTCTACAATTTATACTTTTACTTTTCAAAGAGTCTATATTTACGGTACCTTATTTACTTACATTTAACTTAGACATGAGTTATGCCTAA 1344 0.3899 MHPDQRKKSSVDVDFFTEYGEGSRYKIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDIMTDFLGTPSPDAIARVRNEKARRYLSSMRKKKPVPFSQKFSNADPLALRLLERMLAFEAKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEFLEGAEPTGFMYPRFCIKHVPKFLFHMNHISNLLHWLKHFMSSFNHFFCLILVLQFILLLFKESIFTVPYLLTFNLDMSYA 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00601 447 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Car01g00601 447 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 381 - -
Car01g00601 447 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
Car01g00601 447 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00601 447 Gene3D Phosphorylase Kinase; domain 1 40 361 - -
Car01g00601 447 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Car01g00601 447 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 16 9 381 - -
Car01g00601 447 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Car01g00601 447 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00601 447 CDD STKc_TDY_MAPK 24 361 - -
Car01g00601 447 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00601 Car-Chr1 4959327 4965657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00601 1 398 MAP Kinase Gene Family AT5G19010 89.698 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Car01g00601 Pkinase 3.1e-67 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00601 01 4959327 4965657 Car01g00601 01 4959327 4965657 ECH
Car07g00642 07 5555428 5561858 Car01g00601 01 4959327 4965657 PCT