Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00598 ATGATCAGTTCTGTTCTACACTCATCCTTCTCTCTCTCTTCTCTCTGTTGTTcattccttccattccattccatttccaAGCTCCTATCTCCAATGGCTTCCATTGCTATCTTCAGAAAACGCCTTCTCCTCTCTTTCCATTTCATCATATCTCGTTCAACTTCTTCCACCAACAATGCATCTGCTCTTCTTTCTCTCCGGAGATCCATGGCCACTTTCACACGAACAAAGCCACATCTTAATGTTGGCACCATTGGCCATGTAGATCATGGAAAAACTACACTAACTGCTGCAATCACAAAGGTGCTAGCTGATGAAGGTAAAGCCAAGGCCATTGCTTTTGATGAAATAGACAAGGCTCCTGAGGAGAAAAAGAGAGGAATTACTATTGCTACAGCTCATGTTGAGTATGAGACAGCAAAGAGGCATTATGCCCATGTTGATTGCCCAGGACATGCAGATTATGTCAAGAACATGATAACTGGAGCTGCACAAATGGATGGCGGAATCCTCGTGGTTTCTGCTCCAGATGGTCCAATGCCTCAAACAAAGGAACATATACTCCTCGCTCGTCAGGTTGGTGTGCCATCACTGGTATGTTTTCTAAATAAAGTAGATGCTGTTGATGATCCAGAGTTACTTGAACTTGTGGAAATGGAGCTTCGCGAACTACTCAACTTCTACAAGTTTCCAGGGGATGATATCCCAATTGTAAGAGGTTCAGCTCTGTCTGCATTGCAAGGGACTAATGAAGAGCTTGGAAAAAAAGCTATCTTGAAACTAATGGATGCTGTGGATGAATACATTTCTGATCCCGTGCGCCAGCTTGACAAGCCTTTCTTAATGCCAATAGAAGATGTTTTCTCTATTCAGGGGCGTGGAACTGTTGTCACCGGTCGTGTTGAACAAGGCACTGTCAAAGTTGGTGAAGAGGTTGAAATACTGGGACTAACAAAGAGTGAACCTTTGAAGACTACTGTAACTGGTGTTGAAATGTTCAAGAAAATTTTGGATAGAGGACAAGCTGGTGATAATGTCGGACTTCTTCTACGAGGTCTTAAGCGAGATGATGTACAGAGGGGAATGGTTATCACAAAGCCTGGTGCATTGAAAACATATAAGAAGTTTGAAGCAGAGATTTATGTCCTCTCAAAAGATGAAGGTGGCCGTCATACCGCATTTTTCTCTAACTATATGCCTCAGTTTTACCTGAGGACTGCAGACATTACTGGAAAAGTGCAGTTACCTGAAAATGTTAAGATGGTTATGCCTGGTGATAATGTGACTGCAACTTTTGAGCTGATATTACCTGTTCCTCTTGAAACCGGACAAAGGTTTGCTTTGAGAGAAGGAGGCAGGACAGTTGGTGCAGGAGTGGTCTCCAAAGTGATTTCCTAG 1398 0.422 MISSVLHSSFSLSSLCCSFLPFHSISKLLSPMASIAIFRKRLLLSFHFIISRSTSSTNNASALLSLRRSMATFTRTKPHLNVGTIGHVDHGKTTLTAAITKVLADEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLNFYKFPGDDIPIVRGSALSALQGTNEELGKKAILKLMDAVDEYISDPVRQLDKPFLMPIEDVFSIQGRGTVVTGRVEQGTVKVGEEVEILGLTKSEPLKTTVTGVEMFKKILDRGQAGDNVGLLLRGLKRDDVQRGMVITKPGALKTYKKFEAEIYVLSKDEGGRHTAFFSNYMPQFYLRTADITGKVQLPENVKMVMPGDNVTATFELILPVPLETGQRFALREGGRTVGAGVVSKVIS 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00598 465 Pfam Elongation factor Tu GTP binding domain 77 270 IPR000795 GO:0003924|GO:0005525
Car01g00598 465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 295 IPR027417 -
Car01g00598 465 PANTHER ELONGATION FACTOR TU-RELATED 54 465 - -
Car01g00598 465 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 118 133 IPR031157 -
Car01g00598 465 Gene3D - 69 272 IPR027417 -
Car01g00598 465 PRINTS GTP-binding elongation factor signature 81 94 IPR000795 GO:0003924|GO:0005525
Car01g00598 465 PRINTS GTP-binding elongation factor signature 125 133 IPR000795 GO:0003924|GO:0005525
Car01g00598 465 PRINTS GTP-binding elongation factor signature 145 155 IPR000795 GO:0003924|GO:0005525
Car01g00598 465 PRINTS GTP-binding elongation factor signature 161 172 IPR000795 GO:0003924|GO:0005525
Car01g00598 465 PRINTS GTP-binding elongation factor signature 198 207 IPR000795 GO:0003924|GO:0005525
Car01g00598 465 Hamap Elongation factor Tu [tuf]. 68 465 IPR004541 GO:0003746|GO:0005525|GO:0006414
Car01g00598 465 Pfam Elongation factor Tu C-terminal domain 370 463 IPR004160 -
Car01g00598 465 Gene3D Translation factors 409 464 - -
Car01g00598 465 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 374 465 IPR009001 -
Car01g00598 465 Gene3D Translation factors 275 405 - -
Car01g00598 465 PANTHER ELONGATION FACTOR TU 54 465 - -
Car01g00598 465 SUPERFAMILY Translation proteins 274 370 IPR009000 -
Car01g00598 465 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 77 273 IPR000795 GO:0003924|GO:0005525
Car01g00598 465 TIGRFAM small_GTP: small GTP-binding protein domain 81 217 IPR005225 GO:0005525
Car01g00598 465 CDD EF_Tu 78 272 IPR041709 -
Car01g00598 465 CDD EFTU_II 280 368 IPR033720 -
Car01g00598 465 TIGRFAM EF-Tu: translation elongation factor Tu 69 464 IPR004541 GO:0003746|GO:0005525|GO:0006414
Car01g00598 465 CDD EFTU_III 371 460 - -
Car01g00598 465 Pfam Elongation factor Tu domain 2 294 365 IPR004161 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00598 Car-Chr1 4944802 4948356 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00598 75 463 Eukaryotic Initiation Factors Gene Family AT5G60390 29.977 1.16e-43 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00598 K02358 - gmx:102667962 744.191