Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00571 ATGAGCGATGAATTACGAGGAGAACCACAACCACCTCATTCCTCGAGCAATAACGTCCACAAGTCAGAAAAAAAACAAGTAGATAAAAAGGAGAGTCCTTCTGTAAAAGGCAGACGACCTCGACCTGGATTTTCTGATTCTTTTTCTAGTATTGATTTTGCAAACTTAGACATTGAAGAGGGAAGCCAAACTGAGTATTCTCCTAGAAGTCAAGAATCTGAAACACCAAGTTCAAGGGCAAGTACTTCTGATTCTGAGGGCCAAGCAGGTTTAAGAGGAAATCTTAATAATAATAATCAGTGGCGTGGTTTCTTTAAATTACTCAAAAAGGGTTCCCAAATGCCTTTTCAAACTTTTCATCCGTTGAAAAATGTTCCAAAACTTACTAGAAGAAAAAGCAAAAGAATTAGGGAGGATCTCATTCCATCTCTCAATTCTCCAGCTCTACAGTCATCTTTTGACTCTGAGTTTTGCTGCTTCAAATCTTCATGGAAAAATTTTACTCTCTCGGAGATTCAAGCTGCAACCAATGACTTTAGCCATGATAATTTGATTGGAGAGGGAGGCTATGCTGAGGTTTACTTAGGAAAATTGGAAGATGGAAACTTTGTTGCCATTAAAAGGTTGACAAGAGGGTGCCAAGAAGAAATGACTGCAGATTTCTTGTCTGAGCTTGGCATTATAGTGCATGTTGACCACCCCAATATTGCTAGATTGATTGGATATGGTGTTGAAGGTGGAATGTTTCTTGTTCTTCAGTTGTCTCCTCATGGAAGCTTGTCATCCTTACTTTATGGACCTAGAGAGAAACTGAATTGGAGCCTTAGATTTAAGATTGCTATGGGGACTGCTGAGGGTCTTCGTTATCTGCATGAGGGATGTCAAAGAAGGATTATTCACAAAGATATCAAGGCTTCTAATATACTTCTCTCAGAGGATTTTGAGCCTCAGATATCTGATTTTGGGCTTGCAAAATGGTTACCTGATCAATGGACTCACCATACTGTCTCCAAAGTGGAAGGCACATTTGGCTATCTTCCTCCTGAGTTCTTCCTGCATGGTATAGTAGATGAAAAAACTGATGTATATGCTTATGGTGTGCTATTATTGGAGCTCATTACTGGGAGACAAGCTTTGGATAGTTCACAGAAAAGTCTTGTGATGTGGGCAAAACCTTTGTTATCTAGTAATAACATCAAAGAGCTAGTTGATCCAATTTTGGATGATGCTTATGATGGAGAGCAGATGAAACTTGTAATCTTAACAGCTTCTATGTGTATAGACCAATCCTCAATACAACGACCAGTAATGAGTCAGGTCCTACAAATACTAAGAGGTGAACAAGAATGCTTGAAAACCTTGAAAGGACAGAAATCAAAACTTCATAGGACATACTCTGAAGAACTATTTGATGCAGAAGATTACAACTCAACAAAGTTTTTGAGCGACAGGGATCGACATATGGAGACTATTTTAGGCATCAGTAACTCTAACATTAAAGAAGAAAACAGTCCAAATTAG 1521 0.3866 MSDELRGEPQPPHSSSNNVHKSEKKQVDKKESPSVKGRRPRPGFSDSFSSIDFANLDIEEGSQTEYSPRSQESETPSSRASTSDSEGQAGLRGNLNNNNQWRGFFKLLKKGSQMPFQTFHPLKNVPKLTRRKSKRIREDLIPSLNSPALQSSFDSEFCCFKSSWKNFTLSEIQAATNDFSHDNLIGEGGYAEVYLGKLEDGNFVAIKRLTRGCQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSLLYGPREKLNWSLRFKIAMGTAEGLRYLHEGCQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFLHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWAKPLLSSNNIKELVDPILDDAYDGEQMKLVILTASMCIDQSSIQRPVMSQVLQILRGEQECLKTLKGQKSKLHRTYSEELFDAEDYNSTKFLSDRDRHMETILGISNSNIKEENSPN 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00571 506 ProSitePatterns Protein kinases ATP-binding region signature. 185 207 IPR017441 GO:0005524
Car01g00571 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 298 310 IPR008271 GO:0004672|GO:0006468
Car01g00571 506 MobiDBLite consensus disorder prediction 1 97 - -
Car01g00571 506 SMART serkin_6 179 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00571 506 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 ISOFORM X1 29 481 - -
Car01g00571 506 Pfam Protein tyrosine and serine/threonine kinase 182 388 IPR001245 GO:0004672|GO:0006468
Car01g00571 506 Gene3D Phosphorylase Kinase; domain 1 143 253 - -
Car01g00571 506 MobiDBLite consensus disorder prediction 18 37 - -
Car01g00571 506 SUPERFAMILY Protein kinase-like (PK-like) 160 444 IPR011009 -
Car01g00571 506 ProSiteProfiles Protein kinase domain profile. 179 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00571 506 Gene3D Transferase(Phosphotransferase) domain 1 256 468 - -
Car01g00571 506 PANTHER OS08G0249100 PROTEIN 29 481 - -
Car01g00571 506 MobiDBLite consensus disorder prediction 48 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00571 Car-Chr1 4721107 4725015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00571 150 463 Receptor kinase-like Gene Family AT1G53420 39.130 4.08e-70 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Car01g00571 PK_Tyr_Ser-Thr 4.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00571 - - lja:Lj6g3v1915960.1 835.099
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00571 01 4721107 4725015 Car01g00571 01 4721107 4725015 ECH
Car01g00571 01 4721107 4725015 Car04g00813 04 8042214 8045632 ECH