Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00566 ATGGAATCCCAATCCCATTCAATTCTCCCTAGTATGGACCCTTCTGAAGATCTTTCCTCTGTTTGGGACCTCACTTATTTCCTTGACTTTAATCTAGATGAAGATACATCTCTCCCTTTGAATCTGGACGACAAAATTCCACCACTCCCACCTACTCCCAACCCTAACCCACCTAACACCAACCCTAACCCTCCTAACACCATCCCTAACCCTCAGATCCGAAAACGTGACCCTAGACTCACTTGCTCCAACTTTCTCGCGGGTGTGGTTCCATGTGCGTGTCCTGAACTCGATGCTCAGCTCGAAGAAAACGGTTTACCTGGTAAGAAACGTGCTCGTACCGCACGTGCATCTACTTCGTCGCGTTGTCAGGTTACTGGTTGTGAAGTTGATATATCTGAACTTAAAGGTTATCACCGACGTCATAGAGTTTGTTTGCGATGTGCAAATGCCGCTACCGTTCTTCTTGATGGTGAGGCTAAGAGATACTGTCAACAGTGCGGAAAGTTTCACGTTTTATCGGACTTCGACAAAGATAAACGAAGTTGTAGAAGGAAATTGGAGCGTCATAACACTAGGAGAAGGAGAAAGGCTTCAGATTCTACAGAAGTTGTTGATCATGAACTTCAAATTGTTACTCAAAACGAGGATTCAAATTGTGATGGAGAAATTGGAATAGATTATTCGAATTTGAGCAGTCAAAATATTGATAAAAGAGTGTCGCCAGATCATGAAGAAGAACCATCTGCTATTCGGTCCTCATCTCCAGAGACACAGAATATTAACAGTGATAGTGTTGTGTCCGTTGTTGCTTCGGCTGAAACACAAGTGAATGTTGGAAAAGATGTTTCCAATATTTCCAAGTCGCCTTCATATTGTGACAATAGAAGTGATTATTCTTCTATGTGCCAAACAGGTCGGATTTCTTTTAAGCTTTACGATTGGAATCCTGCAGAATTTCCGAGAAGGCTACGGAACCAAATATGCCAATGGTTGGCAAGTATGCCTATGGAACTGGAAGGATATATCCGCCCTGGGTGTACAATCCTGACTATTTTTATTGCAATGCCAAATATTATGTGGATAGGTCTACTCAAAGATCCTATGTATTACATGCACGATCTTGTTGCTCCTAGAAACTTGCTATGGGGAAGAGGCTCTGCTCTTATTCATCTGAATGACACGATCTTCAGTGTTATGAAAGATGGAAGTTCTGTGACAGAAGTCGAGGTAAACATGCAGGTACCTAGGCTTCACTATATTCATCCCACATGCTTTGAAGCAGGGAAACCGATGGAATTTTTTGCTTGTGGAAGTAATTTGCTGCAGCCTAAGTTTCGGTTTCTTGTATCTTTTTATGGAAAGTATCTGAAGTGTGAGTATTGTGTCCCATCTCCACATAACTGGACTGAAGACAATAGTTCTTGTGCTTTTGACAATCAGTTATACAAAATATGTATTCCTCATACTGAGGAAAATCTCATGGGGCCTGCATTTATTGAGGTTGAGAATGAGTCTGGTTTATCAAACTTTATTCCTGTACTTATTGGGGATAAAGAAATTTGCACTGAAATGAAGAGATTGCAAAAAAAACTAGATGTATCTCTCCTTTATAAACAATTTCGGTCCGCAGCTGGTGGTTCTATTTGTAGTTCATGTGAAGCTTTTGTCCATACTCAGACGTCATCTTCATTAGACTTGCTTCTAGACATAGCATGGTTACTTAAGAACCCTGCTTCAGAAAATTTTGAAAGAGTGGTATCTACTTCACATATTCAAAGATGTTGCTATTTGTTGGATTTTCTAGTATGCAATGATTCAACAATCATGTTGGGAAAAATATTACCAAATTTGATAATTTTAACAGAAATCGTGAAATCCAATTTAAGTGATGTTGACACGGCCCAACTACTAAAGTGCATGGGTAATGCTAGAGATGCTATTTATCAGAAACATCATAAAGGTGGAGGTATAGTTTTTCACTCCAAAATGGAAGATTGTCAAAGTTGTTCTCAAGATGACATGTTATCGGTAGTTGAAGTTAATAGTCAGGGTATCCTGTCTAGAGCAGATGCAGAATTGGGATATGTAAGAAGTCTTGCTTTTGATGAAAAAAATCATAGTACGCCTCTTTTGAAAAGAGATATTATAATGAACGTGGAAGAGTTGCCTAACAAATGTGACCATCAATATCTTACAAAGGGATTCTTGAGCTCTCGACCAACTATTTTTGTGCTTGTCTCAATTGGTGTTTGCCTTGCGGTATGCGTATCCGTCCTTCATCATGGGAGGGTTAATGAGTTGGCGGTATCCATCAGACGGTGTTTGTTCAACCATTAA 2340 0.3991 MESQSHSILPSMDPSEDLSSVWDLTYFLDFNLDEDTSLPLNLDDKIPPLPPTPNPNPPNTNPNPPNTIPNPQIRKRDPRLTCSNFLAGVVPCACPELDAQLEENGLPGKKRARTARASTSSRCQVTGCEVDISELKGYHRRHRVCLRCANAATVLLDGEAKRYCQQCGKFHVLSDFDKDKRSCRRKLERHNTRRRRKASDSTEVVDHELQIVTQNEDSNCDGEIGIDYSNLSSQNIDKRVSPDHEEEPSAIRSSSPETQNINSDSVVSVVASAETQVNVGKDVSNISKSPSYCDNRSDYSSMCQTGRISFKLYDWNPAEFPRRLRNQICQWLASMPMELEGYIRPGCTILTIFIAMPNIMWIGLLKDPMYYMHDLVAPRNLLWGRGSALIHLNDTIFSVMKDGSSVTEVEVNMQVPRLHYIHPTCFEAGKPMEFFACGSNLLQPKFRFLVSFYGKYLKCEYCVPSPHNWTEDNSSCAFDNQLYKICIPHTEENLMGPAFIEVENESGLSNFIPVLIGDKEICTEMKRLQKKLDVSLLYKQFRSAAGGSICSSCEAFVHTQTSSSLDLLLDIAWLLKNPASENFERVVSTSHIQRCCYLLDFLVCNDSTIMLGKILPNLIILTEIVKSNLSDVDTAQLLKCMGNARDAIYQKHHKGGGIVFHSKMEDCQSCSQDDMLSVVEVNSQGILSRADAELGYVRSLAFDEKNHSTPLLKRDIIMNVEELPNKCDHQYLTKGFLSSRPTIFVLVSIGVCLAVCVSVLHHGRVNELAVSIRRCLFNH 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00566 779 MobiDBLite consensus disorder prediction 231 264 - -
Car01g00566 779 MobiDBLite consensus disorder prediction 39 74 - -
Car01g00566 779 MobiDBLite consensus disorder prediction 44 71 - -
Car01g00566 779 ProSiteProfiles Zinc finger SBP-type profile. 120 197 IPR004333 GO:0003677
Car01g00566 779 SUPERFAMILY SBT domain 122 201 IPR036893 GO:0003677|GO:0005634
Car01g00566 779 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 777 IPR044817 GO:0003677
Car01g00566 779 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 16 777 - -
Car01g00566 779 Gene3D - 114 184 IPR036893 GO:0003677|GO:0005634
Car01g00566 779 Pfam SBP domain 123 197 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00566 Car-Chr1 4659193 4665907 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00566 13 773 SBP-box Gene Family AT5G18830 45.594 0.0 628
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Car01g00566 SBP 2.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00566 - - aprc:113863838 1074.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00566 01 4659193 4665907 Car01g00566 01 4659193 4665907 ECH