Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00563 ATGCCACAAAATCAACCATCAACCCCTCATCAACCCCACCAGACCGACACGGGGCTAGACAAAGAAATTTCGGATAGTGGAACCAGTGGGAGGCGTCCAGATATTTCACTTCAAGTTCCACCTAGACCTTTAGGGTTTGGCAGCACCTTGCGGGCTTTGAGCTTCAAAAGAAAAGCAAATGTAGTAATAGCAGATGGTGAAAGAAGCAGCCTCCTTAATTCAGACCCTAAGACAGCTGCAGAGAGTACTAATATGGCCTCCATATCTGAAATTGTATGGTCAAGATGTACCTCTCTTCCTGTTAGACATGGACAAAATGTGTTGGTGTCGCCTACAGTTTCTACGCCCGTGTCTGCAAGGACATATACTGAACAACAGCAGATTAAGCCACCTAAAGATGTTAAATCTAAGGTTTCAAGGTCCCTTTCTGTACCTGGACGAAATCTTGTTATTGTAAGATCTGTCTCTTTTAATATCCGCAGTGAACAGGAACAAGAAGATACAAATGatgATCAAATAACTCCCGTGCCAGTAGAAGTTGTTGACGATGAAGAAATTCCAGAAGAGGAAGCAGTGTGTAGGATATGTCTTGATGTGTGCGACGAAAGAAATACATTTAAAATGGAATGCAGTTGCAAAGGTGACCTGACATTGGTACATGAAGAATGTTTAATCAAATGGTTCAGCACAAAAGGAAACAAGAAATGTGAGGTATGCGGACAAGAGGTTCAGAATTTACCTGTTACCTTGCTCCGTGTGTCCAGCTCTGTTCAACAAAGAAACAGACAGTTGCAGGATCATCGGAGCTTAAGTTCAGAAACATTAAGTGCTTGGCAAGACTTTGTGGTGCTTGTCCTAATAAGCACAATATGCTACTTTTTCTTTCTTGAACAGCTACTGCTTCATGATTTGAAGACTCAAGCTATCATTATTTCAGCACCTTTTGCCTTTACCTTGGGCCTCCTGGCATCTGTTTTAGCAATCGTTCTCGCAATAAAAGAGTATATATGGACATACGCTGCTCTTGAGTTTGCACTTATGGCTGTATTTGTGCATCTGTTTTATACTTGGTTGCATTTGGCGCCCATTTATTCGATACTTCTTTCATCAGTTTTGGGTTTTGGAGTTGCTATGGGAATCAACTATATGTATATCAAGTATGTGACATGGAGACTTCAGGTCACCCCTGATATCCCATGA 1200 0.4158 MPQNQPSTPHQPHQTDTGLDKEISDSGTSGRRPDISLQVPPRPLGFGSTLRALSFKRKANVVIADGERSSLLNSDPKTAAESTNMASISEIVWSRCTSLPVRHGQNVLVSPTVSTPVSARTYTEQQQIKPPKDVKSKVSRSLSVPGRNLVIVRSVSFNIRSEQEQEDTNDDQITPVPVEVVDDEEIPEEEAVCRICLDVCDERNTFKMECSCKGDLTLVHEECLIKWFSTKGNKKCEVCGQEVQNLPVTLLRVSSSVQQRNRQLQDHRSLSSETLSAWQDFVVLVLISTICYFFFLEQLLLHDLKTQAIIISAPFAFTLGLLASVLAIVLAIKEYIWTYAALEFALMAVFVHLFYTWLHLAPIYSILLSSVLGFGVAMGINYMYIKYVTWRLQVTPDIP 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00563 399 SMART ringv_2 192 240 IPR011016 GO:0008270
Car01g00563 399 SUPERFAMILY RING/U-box 189 243 - -
Car01g00563 399 CDD RING_CH-C4HC3_MARCH 193 240 - -
Car01g00563 399 MobiDBLite consensus disorder prediction 1 43 - -
Car01g00563 399 Pfam RING-variant domain 193 239 IPR011016 GO:0008270
Car01g00563 399 PANTHER ZINC FINGER PROTEIN 6 395 - -
Car01g00563 399 ProSiteProfiles Zinc finger RING-CH-type profile. 185 246 IPR011016 GO:0008270
Car01g00563 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 248 IPR013083 -
Car01g00563 399 PANTHER OS02G0165000 PROTEIN 6 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00563 Car-Chr1 4617153 4623116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00563 179 302 C3H Transcription Factor Family AT2G37950 29.545 1.27e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00563 - - cam:101502163 764.992