Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00554 ATGGCTATAATAAGGAGTATAATAGAAGACATGAGATCCAGATCTCATAGGGTAGCGGTTGTGGTAGATAAGGAAGAAGAGAAAGTGGTGGTTGGTGATAGTTTAAGGCAAAGTTGTTGGGCCAACATGCCTCAAGAGCTTCTCCGTGAAGTTCTTCTCCGAATTGAGGCGTCGGAAGACACGTGGCCGCCGAGGAAGAACGTTGTTGCATGTGCTGGAGTGTGCCGGAGTTGGAGAGTTATCACTAAAGAAATCGTTAAAAAACCTGAACTTTCATCTAAGATAACTTTCCCCATTTCTGTTAAGCAGCCGGGCCCAAGGGAGAATCTCATTCAATGCTTTATAAAGCGCAACCGGTCCACTCAAACGTATTATTTATTTCTCAGTTTAACTAGTTCGCTAGGTGACGACGGAAAGTTCCTTCTGGCTGCACGCAGATGTAGACGTCCTACATGCACAGATTATATTATCTCTCTACATGCCGATGATATGTCAAGAGGAAGCAACAACTATGTTGGGAAACTGAGATCAAATTTCCTCGGAACGAAGTTCACAGTCTATGATGGCCAGCCACCTCATGCAGGGGCAAACATTACTAAAAGTCGTTCAACTAGGTTGGTGAATCTGAAGCAGGTTTCACCAAAGGTCCCAAATAGAGACTTTACGGTGGCCCACATCTCATATGAATTGAATGTGCTAGGCTCTAGGGGGCCTAGGAGAATGCATTGTGTCATGAATTCCATTCCTGCCTCTTCAATTGAACCGGGAGGGGAAGCACCTACACAGACTGAGTTTTCTTTTAACAGCGTAGATATGTTTCCCCTGTTTCCTTTTTTCCGATCAAAATCAAATCGTGTGGACAAATCTCTATCTGGACCCCTTGGTGATCAAAAGGATGGTAAGCTTGTGTTGAAAAACAAGGCTCCTAGGTGGCATGAGCAGCTACAGTGTTGGTGCTTAAACTTTCACGGACGGGTGACAGTTGCCTCAGTTAAAAACTTTCAGTTGGTGGCTTCCGCAGAAAATGGACCTGCTGGACCGGAACATGATAAGATTATCCTGCAATTTGGAAAAGTTGGGAAGGATTTGTTTACGATGGATTACCGATACCCTATCTCGGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTCGATACCAAGATTGCTTGTGAATAA 1179 0.4453 MAIIRSIIEDMRSRSHRVAVVVDKEEEKVVVGDSLRQSCWANMPQELLREVLLRIEASEDTWPPRKNVVACAGVCRSWRVITKEIVKKPELSSKITFPISVKQPGPRENLIQCFIKRNRSTQTYYLFLSLTSSLGDDGKFLLAARRCRRPTCTDYIISLHADDMSRGSNNYVGKLRSNFLGTKFTVYDGQPPHAGANITKSRSTRLVNLKQVSPKVPNRDFTVAHISYELNVLGSRGPRRMHCVMNSIPASSIEPGGEAPTQTEFSFNSVDMFPLFPFFRSKSNRVDKSLSGPLGDQKDGKLVLKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASAENGPAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00554 392 PANTHER TUBBY-RELATED 4 392 - -
Car01g00554 392 ProSitePatterns Tub family signature 2. 377 392 IPR018066 -
Car01g00554 392 PRINTS Tubby superfamily signature 155 171 IPR000007 -
Car01g00554 392 PRINTS Tubby superfamily signature 171 195 IPR000007 -
Car01g00554 392 PRINTS Tubby superfamily signature 220 247 IPR000007 -
Car01g00554 392 PRINTS Tubby superfamily signature 304 321 IPR000007 -
Car01g00554 392 PRINTS Tubby superfamily signature 322 338 IPR000007 -
Car01g00554 392 PRINTS Tubby superfamily signature 349 368 IPR000007 -
Car01g00554 392 PRINTS Tubby superfamily signature 370 392 IPR000007 -
Car01g00554 392 Gene3D Tubby Protein; Chain A 97 392 IPR025659 -
Car01g00554 392 ProSitePatterns Tub family signature 1. 322 335 IPR018066 -
Car01g00554 392 SUPERFAMILY Tubby C-terminal domain-like 89 392 IPR025659 -
Car01g00554 392 Pfam Tub family 101 387 IPR000007 -
Car01g00554 392 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 4 392 - -
Car01g00554 392 SUPERFAMILY F-box domain 32 83 IPR036047 GO:0005515
Car01g00554 392 Pfam F-box domain 40 89 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00554 Car-Chr1 4510584 4515429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00554 12 392 TUB Transcription Factor Family AT2G47900 71.875 0.0 559
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Car01g00554 Tub 5.2e-112 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00554 K19600 - gmx:100778346 673.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00554 01 4510584 4515429 Car01g00554 01 4510584 4515429 ECH