Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car01g00554 | ATGGCTATAATAAGGAGTATAATAGAAGACATGAGATCCAGATCTCATAGGGTAGCGGTTGTGGTAGATAAGGAAGAAGAGAAAGTGGTGGTTGGTGATAGTTTAAGGCAAAGTTGTTGGGCCAACATGCCTCAAGAGCTTCTCCGTGAAGTTCTTCTCCGAATTGAGGCGTCGGAAGACACGTGGCCGCCGAGGAAGAACGTTGTTGCATGTGCTGGAGTGTGCCGGAGTTGGAGAGTTATCACTAAAGAAATCGTTAAAAAACCTGAACTTTCATCTAAGATAACTTTCCCCATTTCTGTTAAGCAGCCGGGCCCAAGGGAGAATCTCATTCAATGCTTTATAAAGCGCAACCGGTCCACTCAAACGTATTATTTATTTCTCAGTTTAACTAGTTCGCTAGGTGACGACGGAAAGTTCCTTCTGGCTGCACGCAGATGTAGACGTCCTACATGCACAGATTATATTATCTCTCTACATGCCGATGATATGTCAAGAGGAAGCAACAACTATGTTGGGAAACTGAGATCAAATTTCCTCGGAACGAAGTTCACAGTCTATGATGGCCAGCCACCTCATGCAGGGGCAAACATTACTAAAAGTCGTTCAACTAGGTTGGTGAATCTGAAGCAGGTTTCACCAAAGGTCCCAAATAGAGACTTTACGGTGGCCCACATCTCATATGAATTGAATGTGCTAGGCTCTAGGGGGCCTAGGAGAATGCATTGTGTCATGAATTCCATTCCTGCCTCTTCAATTGAACCGGGAGGGGAAGCACCTACACAGACTGAGTTTTCTTTTAACAGCGTAGATATGTTTCCCCTGTTTCCTTTTTTCCGATCAAAATCAAATCGTGTGGACAAATCTCTATCTGGACCCCTTGGTGATCAAAAGGATGGTAAGCTTGTGTTGAAAAACAAGGCTCCTAGGTGGCATGAGCAGCTACAGTGTTGGTGCTTAAACTTTCACGGACGGGTGACAGTTGCCTCAGTTAAAAACTTTCAGTTGGTGGCTTCCGCAGAAAATGGACCTGCTGGACCGGAACATGATAAGATTATCCTGCAATTTGGAAAAGTTGGGAAGGATTTGTTTACGATGGATTACCGATACCCTATCTCGGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTCGATACCAAGATTGCTTGTGAATAA | 1179 | 0.4453 | MAIIRSIIEDMRSRSHRVAVVVDKEEEKVVVGDSLRQSCWANMPQELLREVLLRIEASEDTWPPRKNVVACAGVCRSWRVITKEIVKKPELSSKITFPISVKQPGPRENLIQCFIKRNRSTQTYYLFLSLTSSLGDDGKFLLAARRCRRPTCTDYIISLHADDMSRGSNNYVGKLRSNFLGTKFTVYDGQPPHAGANITKSRSTRLVNLKQVSPKVPNRDFTVAHISYELNVLGSRGPRRMHCVMNSIPASSIEPGGEAPTQTEFSFNSVDMFPLFPFFRSKSNRVDKSLSGPLGDQKDGKLVLKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASAENGPAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE | 392 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car01g00554 | 392 | PANTHER | TUBBY-RELATED | 4 | 392 | - | - | |
Car01g00554 | 392 | ProSitePatterns | Tub family signature 2. | 377 | 392 | IPR018066 | - | |
Car01g00554 | 392 | PRINTS | Tubby superfamily signature | 155 | 171 | IPR000007 | - | |
Car01g00554 | 392 | PRINTS | Tubby superfamily signature | 171 | 195 | IPR000007 | - | |
Car01g00554 | 392 | PRINTS | Tubby superfamily signature | 220 | 247 | IPR000007 | - | |
Car01g00554 | 392 | PRINTS | Tubby superfamily signature | 304 | 321 | IPR000007 | - | |
Car01g00554 | 392 | PRINTS | Tubby superfamily signature | 322 | 338 | IPR000007 | - | |
Car01g00554 | 392 | PRINTS | Tubby superfamily signature | 349 | 368 | IPR000007 | - | |
Car01g00554 | 392 | PRINTS | Tubby superfamily signature | 370 | 392 | IPR000007 | - | |
Car01g00554 | 392 | Gene3D | Tubby Protein; Chain A | 97 | 392 | IPR025659 | - | |
Car01g00554 | 392 | ProSitePatterns | Tub family signature 1. | 322 | 335 | IPR018066 | - | |
Car01g00554 | 392 | SUPERFAMILY | Tubby C-terminal domain-like | 89 | 392 | IPR025659 | - | |
Car01g00554 | 392 | Pfam | Tub family | 101 | 387 | IPR000007 | - | |
Car01g00554 | 392 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 9 | 4 | 392 | - | - | |
Car01g00554 | 392 | SUPERFAMILY | F-box domain | 32 | 83 | IPR036047 | GO:0005515 | |
Car01g00554 | 392 | Pfam | F-box domain | 40 | 89 | IPR001810 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Car01g00554 | Car-Chr1 | 4510584 | 4515429 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Car01g00554 | 12 | 392 | TUB Transcription Factor Family | AT2G47900 | 71.875 | 0.0 | 559 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | TUB | Car01g00554 | Tub | 5.2e-112 | CL0395 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car01g00554 | K19600 | - | gmx:100778346 | 673.315 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Car01g00554 | 01 | 4510584 | 4515429 | Car01g00554 | 01 | 4510584 | 4515429 | ECH |