LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car01g00552	ATGGGGTGTGTGTTTGGTAAAGAGTCTTCATCAGTGGAGGAGAGGAGAGAAGAAGTGAGAGAAGCAAAAGCAGATGTTAgtggtggtgttggtggtggtagtggtAGAGAGGTTCagaatgagaaagagggtggagaagagaagagaaCAAGGCCTATTGGGGAGAGAAAAAGGCGATCTTCGAAGCCGAATCCAAGGTTGAGCAATCCACCTAACAATGTTCATGGTGAACAGGTTGCAGCTGGTTGGCCATCTTGGTTGTCTAAGGTTGCTGGTGAAGCTATCAATGGATTGATTCCTAGGAGAGCTGATACTTTTGAGAAGCTTGATAAGATTGGGCAAGGTACATACAGCAATGTTTACAAAGCTAGGGATACTTTATCGGGGAAGATTGTTGCCCTAAAGAAGGTTCGTTTCGACAATTTAGAGCCTGAGAGCGTGAAGTTTATGGCCAGAGAGATTCTGATTCTGCGTCGTTTGGATCATCCTAATGTTGTCAAACTGGAAGGCTTAGTGACTTCTAGAATGTCATGCAGTTTATATCTCGTGTTTGAATACATGGTTCATGATCTGGCTGGACTTGCTACAAACCCCACGATTAAGTTCACAGAGCCTCAGGTAAAATGTTACATGCATCAGCTGTTTTCTGGGCTGGAACATTGTCACAACCGTCACGTGCTGCATCGTGATATAAAGGGTTCAAACCTTCTTATTGACAACGATGGAGTTCTCAAGATTGCTGATTTTGGATTAGCTTCCTTCTTTGATCCTGATCGCAAGCACCCGATGACAAGTAGAGTGGTGACTTTATGGTATCGACCTCCAGAACTTCTTCTTGGAGCCACTGAATATGGTGTAGGTGTGGATCTCTGGAGTGCTGGTTGCATTCTTGCAGAATTGTTGGCCGGAAAACCTATCATGCCTGGTCGAACAGAGGTGGAGCAGCTACATAAGATATTTAAGCTATGTGGTTCTCCTTCTGAAGAATATTGGAAAAAGTCGAAGTTGCCACACGCCACCATTTTTAAGCCTCAACAATCATACAAGCGATGCATAGTGGAGACTTTTAAGAATTTTCCACCATCGTCCTTGCCACTGATCGAGACCCTTCTTGCAATTGATCCAGATGAACGCCTGACTGCTACTGCTGCATTGCATAGTGAATTCTTTACTACAAAACCATATGCTTGTGAGCCTTCTAGCCTTCCTAAATATCCTCCCAGCAAAGAGATGGATGCAAAGCTACGTGATGAAGAAGCTAGAAGATTGAGAGCAGCTGGTAGATCAAATGCCGACGGTGTCAAGAAATCTCGTCCGCGTGAGCGAGTAGGGCGTGGAATTCCAGTTCCAGATGCCAATGCTGAACTTCAAGCAAATATTGATAGACGGCGATTAATCACGCACGCAAATGCTAAGAGCAAGAGTGAGAAGTTTCCTCCTCCGCACCAAGACGGAGCTTTAGGCTATCCTTTGGGTTCTTCACAACACATGGATCCAATTTTCGATCCTCCCGATATTCCATTCAGTTCCACAAACTTCTCGCAACCGAAAGCAAGTATCCAAACTTGGTCCGGTCCATTGGTAGACACCGGTGGCGATGGTGCACCAAGAAGAAAGAAGAAACATGGCAGGTGA	1635	0.4343	MGCVFGKESSSVEERREEVREAKADVSGGVGGGSGREVQNEKEGGEEKRTRPIGERKRRSSKPNPRLSNPPNNVHGEQVAAGWPSWLSKVAGEAINGLIPRRADTFEKLDKIGQGTYSNVYKARDTLSGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMVHDLAGLATNPTIKFTEPQVKCYMHQLFSGLEHCHNRHVLHRDIKGSNLLIDNDGVLKIADFGLASFFDPDRKHPMTSRVVTLWYRPPELLLGATEYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQSYKRCIVETFKNFPPSSLPLIETLLAIDPDERLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNADGVKKSRPRERVGRGIPVPDANAELQANIDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSQHMDPIFDPPDIPFSSTNFSQPKASIQTWSGPLVDTGGDGAPRRKKKHGR	544

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car01g00552	544	PANTHER	CELL DIVISION PROTEIN KINASE	34	543	-	-
	Car01g00552	544	SMART	serkin_6	106	390	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car01g00552	544	SUPERFAMILY	Protein kinase-like (PK-like)	101	395	IPR011009	-
	Car01g00552	544	Gene3D	Phosphorylase Kinase; domain 1	95	188	-	-
	Car01g00552	544	MobiDBLite	consensus disorder prediction	507	526	-	-
	Car01g00552	544	PANTHER	CYCLIN-DEPENDENT KINASE	34	543	-	-
	Car01g00552	544	MobiDBLite	consensus disorder prediction	9	24	-	-
	Car01g00552	544	Gene3D	Transferase(Phosphotransferase) domain 1	189	429	-	-
	Car01g00552	544	MobiDBLite	consensus disorder prediction	423	445	-	-
	Car01g00552	544	MobiDBLite	consensus disorder prediction	1	78	-	-
	Car01g00552	544	Pfam	Protein kinase domain	106	390	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car01g00552	544	MobiDBLite	consensus disorder prediction	423	448	-	-
	Car01g00552	544	CDD	STKc_CDK9_like	106	390	-	-
	Car01g00552	544	MobiDBLite	consensus disorder prediction	39	62	-	-
	Car01g00552	544	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	226	238	IPR008271	GO:0004672\|GO:0006468
	Car01g00552	544	ProSiteProfiles	Protein kinase domain profile.	106	390	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car01g00552	544	MobiDBLite	consensus disorder prediction	470	544	-	-
	Car01g00552	544	ProSitePatterns	Protein kinases ATP-binding region signature.	112	135	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car01g00552	Car-Chr1	4491843	4495830	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car01g00552	101	428	Core Cell Cycle Gene Families	AT5G10270	51.163	7.29e-116	350

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Car01g00552		Pkinase	4.9e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car01g00552	K08819		-	gmx:100779413	961.444