Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00546 ATGGCTGAAGTCATTCCAGAACCTGCCATTGTTTCAGATCCAACTCAAATCGAAGTCAAACTATTTAACCGCTGGAGCTTTGATGATGTTCAGCTTTCTGATGTGTCACTGATCGATTACATTGGAGTTGTGCCATCAAAACATGCGACATATGTTCCACACACCGCCGGAAGATACTCCGTGAAGCGTTTCAGGAAAGCTCAGTGTCCTATTGTAGAGAGACTCACCAACTCTCTCATGATGCACGGTAGGAATAATGGAAAGAAGCTTATGGCTGTCAGAATCATCAAGCATGCTATGGAAATTATTCATTTGCTAACTGACCAGAATCCTATTCAGGTTATTGTTGATGCTGTTGTCAACAGTGGTCCCCGTGAAGATGCTACTCGTATTGGGTCTGCTGGAGTTGTAAGGAGACAGGCTGTGGATATCTCACCTCTACGTCGTGTTAATCAAGCCATCTATCTTTTAACCACTGGTGCACGTGAAGCTGCATTCAGAAACATCAAGTCAATTGCTGAATGTCTTGCTGATGAACTTATTAATGCAGCAAAAGGTTCATCCAACAGTTACGCAATCAAGAAAAAAGATGAAATTGAGAGAGTTGCTAAGGCGAATCGTTAA 624 0.4247 MAEVIPEPAIVSDPTQIEVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00546 207 ProSitePatterns Ribosomal protein S7 signature. 73 99 IPR020606 GO:0003723|GO:0003735|GO:0006412
Car01g00546 207 Pfam Ribosomal protein S7p/S5e 61 207 IPR023798 -
Car01g00546 207 PANTHER 40S RIBOSOMAL PROTEIN S5 8 207 - -
Car01g00546 207 CDD uS7_Eukaryote 20 207 IPR005716 GO:0003735|GO:0006412|GO:0015935
Car01g00546 207 SUPERFAMILY Ribosomal protein S7 20 207 IPR036823 -
Car01g00546 207 PANTHER RIBOSOMAL PROTEIN S7 8 207 IPR000235 GO:0006412
Car01g00546 207 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 2 207 IPR000235 GO:0006412
Car01g00546 207 Gene3D Ribosomal protein S7 domain 7 207 IPR036823 -
Car01g00546 207 TIGRFAM uS7_euk_arch: ribosomal protein uS7 18 207 IPR005716 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00546 Car-Chr1 4412223 4419794 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00546 18 207 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 92.632 7.99e-135 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00546 K02989 - gmx:100305898 370.933