Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00542 ATGACAGTTTTTGGGATTGGAAAATTTATCTGTCAATCGCCAATTTTCCATTTGATTAAATCTACCTATCCCTTTTTATCTTGTGTGGATGAATCACTTTCTTTGCAGGTAGTTGCTGTGAAACAGCTTGACCGAAATGGACTTCAAGGAAATCGAGAGTTTTTGGTGGAAGTTCTCATGCTCAGCCTCTTACATCACCCAAATCTTGTGAACTTAATTGGTTATTGCGCTGACGGTGATCAGAGGCTGCTCGTTTATGAATTCATGCCATTGGGATCTTTGGAGGATCATTTACATGATCTTCCTCCTGACAAGGAGCCTCTAGACTGGAACACAAGGATGAAAATAGCAGCTGGTGCAGCAAAGGGATTGGAATATTTGCATGACAAGGCAAACCCCCCGGTGATATATAGAGACTTAAAATCATCCAACATCCTCCTAGACGAGGGTTATCATCCCAAGTTATCAGATTTTGGGCTGGCAAAACTCGGTCCAGTTGGTGACAAGACTCATGTATCCACGCGAGTAATGGGAACATATGGCTACTGTGCCCCAGAATATGCTATGACAGGTCAACTAACTCTGAAATCAGACGTCTATAGTTTTGGAGTTGTCTTCCTTGAACTCATTACTGGACGCAAAGCTATTGATAATACGCGTGGACATGGAGAGCATAATCTCGTCGCATGGGCACGGCCTCTTTTTAAAGACCGCAGGAAGTTCCCAAAAATGGCCGATCCTTTACTTCAAGGCCGATATCCAATGCGGGGACTGTACCAAGCACTTGCAGTTGCAGCAATGTGTTTGCAGGAACAAGCTGCAACAAGGCCTCTTATTGGAGATGTTGTGACTGCTCTCACATATCTGGCCTCTCAAACATACGACCCTAATGCAGCCAATACGTCAAACAGGGTCGGTCCATCAACCCCTAGGATGAGGGATGACAGAAGGAGCATGACAGATGGTGTGGATAGCCCTGACCGCGGACGGGTCGGTTCCCCTTCTACCCGCAGAAACTCGCCAGACTTCCGGAAGAGAGACAGTAGGGAACCAAGTGAGTTGAGCAGGAGCGACACCGGTGGCGGTGGTTCGGGAAGAAAATGGGGACCGGATGATTTGGAAAGGCAGGAATCTCAGAGAGACAGCCCTGTAAGTACCGGAAGAGGTAGAGAGACTCCGAGGAACCGAGACCTGGATAGAGAACGTGCGGTTGCGGAAGCAAGAGTATGGGGTGAGAATTGGAGAGAGAAGAAAAGAGCAAGTGCAATGGGTAGCTTTGATGCTACAAATGAGTAA 1296 0.4707 MTVFGIGKFICQSPIFHLIKSTYPFLSCVDESLSLQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRGHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAANTSNRVGPSTPRMRDDRRSMTDGVDSPDRGRVGSPSTRRNSPDFRKRDSREPSELSRSDTGGGGSGRKWGPDDLERQESQRDSPVSTGRGRETPRNRDLDRERAVAEARVWGENWREKKRASAMGSFDATNE 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00542 431 Gene3D Transferase(Phosphotransferase) domain 1 90 305 - -
Car01g00542 431 MobiDBLite consensus disorder prediction 390 422 - -
Car01g00542 431 MobiDBLite consensus disorder prediction 309 324 - -
Car01g00542 431 PANTHER OS07G0668900 PROTEIN 36 425 - -
Car01g00542 431 SUPERFAMILY Protein kinase-like (PK-like) 36 286 IPR011009 -
Car01g00542 431 MobiDBLite consensus disorder prediction 339 354 - -
Car01g00542 431 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 36 425 - -
Car01g00542 431 CDD STKc_IRAK 36 287 - -
Car01g00542 431 SMART serkin_6 23 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00542 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Car01g00542 431 Gene3D Phosphorylase Kinase; domain 1 28 89 - -
Car01g00542 431 Pfam Protein tyrosine and serine/threonine kinase 36 218 IPR001245 GO:0004672|GO:0006468
Car01g00542 431 ProSiteProfiles Protein kinase domain profile. 1 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00542 431 MobiDBLite consensus disorder prediction 296 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00542 Car-Chr1 4371878 4377226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00542 37 291 Glycoside Hydrolase AT3G07070 74.902 3.94e-140 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Car01g00542 PK_Tyr_Ser-Thr 6.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00542 - - gmx:100814575 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00542 01 4371878 4377226 Car01g00542 01 4371878 4377226 ECH