Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00535 ATGTCCACCTCTAGAACCTCAAACACTTCCCTCAAAGCATATGATCAAAATCAAACACAGATTAATCTATCTCTTCTTCAACGAAACACATCGCCAGCTTGCGGCGAAAAAAGAGGCAGAAGAAAGCAAACAGAACCAGGTAAATTTCTTGGTGTAAGAAGAAGACCTTGGGGTAGATATGCTGCTGAAATTAGAGATCCTAATACTAAAGAAAGACATTGGCTTGGAACATTTGATACTGCTCAAGAAGCTGCTTTTGCTTATGATAGAGCTGCTCTTTCCATCAAAGGTAGCCAAGCTAGAACAAATTTCATATATTCTTCTTCTTCTAATCATCATGATCATGATACCAATCTTCATGATTTGAATGTTCAATCTCTCTTACCATCTTCAAACTTAaacatcaacaacactactcacaacaagaaaacacaaccaacCAATCACATTGAAAAACAAAGTTCTTCCAACATGAACAATGACAACATGTGTCATGTTCATGAACCATATGATAATTTCTTCTTTTCCAATGATTCTTATAAATCGGGCTATCTTGAATGCATTGTTCCTGTTAATTGTTTCAATCCTGTTTCAAACTTTGGTAATGCAAGTGCTTCAAGTGAACAGCAACAAAATGTTGTTGATTCCATTAGCACAACAAACTTTGGTCAATCATTTTTTGATTACAATGCATTTTCTCAACAAGACTTAAGCATGCAAAAAATGGCCACAAGTGAAACTAGTGATCAAGATTTATGGGATTACTGCAATTACAATGAACTTTCAGCTATTTTTAACAAACCAGTAAGGAGTGAAGAAGAATCGTGTATGTATGCATTATGTCCTTCCATGACAACTAATGATGTTTCTTCAACTACCTATTCATCTTTTGGAGATGTTAACATGGGATACTCACTCTTCTAG 924 0.3366 MSTSRTSNTSLKAYDQNQTQINLSLLQRNTSPACGEKRGRRKQTEPGKFLGVRRRPWGRYAAEIRDPNTKERHWLGTFDTAQEAAFAYDRAALSIKGSQARTNFIYSSSSNHHDHDTNLHDLNVQSLLPSSNLNINNTTHNKKTQPTNHIEKQSSSNMNNDNMCHVHEPYDNFFFSNDSYKSGYLECIVPVNCFNPVSNFGNASASSEQQQNVVDSISTTNFGQSFFDYNAFSQQDLSMQKMATSETSDQDLWDYCNYNELSAIFNKPVRSEEESCMYALCPSMTTNDVSSTTYSSFGDVNMGYSLF 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00535 307 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
Car01g00535 307 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 307 - -
Car01g00535 307 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Car01g00535 307 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Car01g00535 307 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Car01g00535 307 SUPERFAMILY DNA-binding domain 48 106 IPR016177 GO:0003677
Car01g00535 307 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Car01g00535 307 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 307 - -
Car01g00535 307 CDD AP2 48 104 IPR001471 GO:0003700|GO:0006355
Car01g00535 307 Pfam AP2 domain 49 97 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00535 Car-Chr1 4310789 4311712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00535 1 300 AP2-EREBP Transcription Factor Family AT5G18560 38.028 6.45e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Car01g00535 AP2 1.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00535 - - mtr:MTR_2g019750 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00591 07 5181528 5182594 Car01g00535 01 4310789 4311712 PCT