Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00534 ATGGACCACTATCCCCGGTCCACTGAACCTTCCCGGTCTGATCCCTCGCCGGAATGGACCGGACCCGACCCTCAAACCGGTCTAGAAGAGCCTATGTGGCAATTGGGGTTGAATGGTGCTGCAGAGGATTCCTACCCTCAACGACCTGATGAGGTTGATTGCACTTACTATTTGAGAACCGGTTTCTGTGGTTTTGGTTCAAGGTGTCGGTTCAACCACCCTCGTGACCGTGGCACGGTTATTGGAGCTGCTTCTAGGACTGTAGGGGACTATCCAGAACGTGCAGGACAGCCTGTGTGCCAGTATTATATGAGGACAAGATCTTGCAAATTTGGTGCGTCTTGCAAGTACCACCATCCTAGACAGACAGGAGGCACTGCTAGCCCTGTGTCACTAAATTATTATGGATATCCGTTACGCCCAGGTGAAAAGGAATGTTCCTATTTTGCGAAAACGGGACAATGCAAGTTTGGTGCAACTTGTAAATTTGATCATCCAGTTTCTGCTGGTGTTCAGATTCCAGCTCCATCACCAGGTCCCCCAGTTTCACCTTTACATGTACCAGTACCTTCTCCATTATATCCAACAGTACAGACTCCATCTGGTCCTTCATCACAACAAATTGGTGTACTGGTCGCAAGGCCATCTCTACTACAGGGTTCGTTTGTCCAGAGCCCCTATGGACCTGTGGTATTGTCCCCGACCATGGTCCCCTTTTCTGGCTGGGGTCCTTATCAGGCCACTGCGACAAGCCCTGTACTTCCTTCTAGTGCTCCAGCTAATGTTGGTTCACCACAGCTTTATGGGATAACCCAACTACCATCAACAGCTAATGCCTATACTGGACCTTATCAACCTTCTGGTTCCTCAGTTGGTCCTTCAAGCAGAAGTCAGAAGGAACATTCATTTGCAGCAAGGCCTAATCAACCAGAGTATCATTATTACTCTAGAACAGATGAGCTTCCATTTAGTCCATCGTATAGGTATCACCAACCACCAGACATGAGTGCACCAAAAGTGAATGTTGCCCTAAGTCCTGCAGGTCTTCCTTTACGCCCGGGGGCAGCACCTTGCACTCATTACACACAGCGCGGCGTATGCAAGTTCGGTCCTACATGCAAATTTGATCATCCTATTGTATCACTGAGTTACAGTCCATCTGCTTCTTCCCTGACTGATGTGCCAGTTGCACCTTACTTTGTGGGTTCGTCTGTTGGTACTCTTGCTCCTCCATCTTCTTCATCAGAGTTGCAGCCCGAACTCACCACAGGATCCAGCAAGGAGTCTGTTCCATCCAGAATATCTTCATCAGCAAGCACAACGACTGGATCAGTTGGTTTGACTTTGTCAACTGGTGGTCCGGTTTCTCAATCAAGCACTCGGAGTCGGAGTTCCAGTCCTTTAGCAGCTGTCAATACCACAACAAGTAGCAATGTCTCTCACACCTCGAGCTCAGAAATGTGA 1464 0.4877 MDHYPRSTEPSRSDPSPEWTGPDPQTGLEEPMWQLGLNGAAEDSYPQRPDEVDCTYYLRTGFCGFGSRCRFNHPRDRGTVIGAASRTVGDYPERAGQPVCQYYMRTRSCKFGASCKYHHPRQTGGTASPVSLNYYGYPLRPGEKECSYFAKTGQCKFGATCKFDHPVSAGVQIPAPSPGPPVSPLHVPVPSPLYPTVQTPSGPSSQQIGVLVARPSLLQGSFVQSPYGPVVLSPTMVPFSGWGPYQATATSPVLPSSAPANVGSPQLYGITQLPSTANAYTGPYQPSGSSVGPSSRSQKEHSFAARPNQPEYHYYSRTDELPFSPSYRYHQPPDMSAPKVNVALSPAGLPLRPGAAPCTHYTQRGVCKFGPTCKFDHPIVSLSYSPSASSLTDVPVAPYFVGSSVGTLAPPSSSSELQPELTTGSSKESVPSRISSSASTTTGSVGLTLSTGGPVSQSSTRSRSSSPLAAVNTTTSSNVSHTSSSEM 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00534 487 MobiDBLite consensus disorder prediction 408 487 - -
Car01g00534 487 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Car01g00534 487 MobiDBLite consensus disorder prediction 1 30 - -
Car01g00534 487 SUPERFAMILY CCCH zinc finger 50 76 IPR036855 GO:0046872
Car01g00534 487 SUPERFAMILY CCCH zinc finger 355 379 IPR036855 GO:0046872
Car01g00534 487 PANTHER PROTEIN PHOSPHATASE RELATED 1 474 - -
Car01g00534 487 SUPERFAMILY CCCH zinc finger 142 168 IPR036855 GO:0046872
Car01g00534 487 MobiDBLite consensus disorder prediction 279 311 - -
Car01g00534 487 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 474 - -
Car01g00534 487 SUPERFAMILY CCCH zinc finger 97 122 IPR036855 GO:0046872
Car01g00534 487 ProSiteProfiles Zinc finger C3H1-type profile. 352 380 IPR000571 GO:0046872
Car01g00534 487 Gene3D - 47 125 - -
Car01g00534 487 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872
Car01g00534 487 SMART c3hfinal6 94 121 IPR000571 GO:0046872
Car01g00534 487 SMART c3hfinal6 352 379 IPR000571 GO:0046872
Car01g00534 487 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Car01g00534 487 SMART c3hfinal6 140 167 IPR000571 GO:0046872
Car01g00534 487 ProSiteProfiles Zinc finger C3H1-type profile. 94 122 IPR000571 GO:0046872
Car01g00534 487 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 355 378 IPR000571 GO:0046872
Car01g00534 487 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 166 IPR000571 GO:0046872
Car01g00534 487 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 97 121 IPR000571 GO:0046872
Car01g00534 487 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Car01g00534 487 Gene3D - 126 173 - -
Car01g00534 487 MobiDBLite consensus disorder prediction 279 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00534 Car-Chr1 4297343 4304185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00534 1 448 C2H2 Transcription Factor Family AT5G18550 53.159 6.56e-140 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car01g00534 zf-CCCH 2.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00534 - - gmx:100812433 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00534 01 4297343 4304185 Car01g00534 01 4297343 4304185 ECH
Car07g00590 07 5173163 5176987 Car01g00534 01 4297343 4304185 PCT