LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car01g00532	ATGTCGTCTAGGAGGAAGGTTAGGGAGCCAAAGGAAGAAACCGTGACTTTGGGTCCAGCTGTTAAGGACGGAGAACATGTTTTCGGTGTTGCTCGTATCTTTGCATCGTTTAACGACACTTTCATTCATGTCACTGATTTATCTGGCAGGGAAACCCTAGTCCGCATCACTGGTGGAATGAAGGTCAAAGCTGACAGAGATGAATCATCTCCATATGCTGCTATGCTTGCTGCACAAGATGTTGCTACCAGATGCAAGGAGTTGGGTATAACTGCACTTCACATCAAACTCCGAGCTACCGGTGGAAACAAGACTAAAACACCTGGTCCAGGTGCTCAGGCTGCTCTCCGTGCCCTCGCCCGTTCTGGAATGAAGATTGGCCGTATAGAGGATGTTACTCCCATTCCCTCGGACAGCACCCGTAGAAAGAGTGGTAGAAGGGGTAGAAGGCTTTAA	456	0.489	MSSRRKVREPKEETVTLGPAVKDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTKTPGPGAQAALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL	151

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car01g00532	151	PANTHER	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	2	151	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Car01g00532	151	Hamap	30S ribosomal protein S11 [rpsK].	4	148	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Car01g00532	151	Gene3D	Ribosomal protein S11	1	151	IPR036967	GO:0003735\|GO:0005840\|GO:0006412
	Car01g00532	151	Pfam	Ribosomal protein S11	29	147	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Car01g00532	151	MobiDBLite	consensus disorder prediction	130	151	-	-
	Car01g00532	151	ProSitePatterns	Ribosomal protein S11 signature.	116	138	IPR018102	-
	Car01g00532	151	PIRSF	RPS11p_RPS11a_RPS14e_RPS11o	1	148	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Car01g00532	151	SUPERFAMILY	Translational machinery components	24	149	-	-
	Car01g00532	151	PANTHER	BNAA05G27530D PROTEIN	2	151	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Car01g00532	Car-Chr1	4283063	4286035	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car01g00532	3	140	Cytoplasmic Ribosomal Protein Gene Family	AT3G11510	89.130	4.23e-90	257

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car01g00532	K02955		K01000	gmx:100785807	259.996

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