Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00526 ATGTCACTTTCCAGAGCCAAAAACTTCTTCCAGAGGTTCTGGTCAAATGAATTGGAAATCGGAAGTTTTACACATAGCAGTTTTTTGTCTAGTGATCTTCTACCGTCTCTTGGCGCCCGAATAAACCGGGAAACTAGACTACAAAAACACCTAATCTCCCCATTCAATCCTCACTATAGGGCTTGGGAGTTGTTACTGGTTGTTCTAGTCATATACTCAGCTTGGATTTGTCCCTTTGAGTTTGCCTTTCTGACTTATAAGCAAGATGGACTATTCATCATAGACAACATTGTCAATGGCTTCTTCGCCATCGATATCATACTTACATTCTTTGTTGCGTACCTCGATAGCCATTCTTATCTTCTCATTGATGATCCAAAGAAAATCGCAATCAGGTACATATCCACCTGGTTTGCTTTTGATATCTGCTCAACGGCACCACTTGAGCCCATTAGCCTCCTCTTCACTAATCGTAACAGTGAGCTCGGCTTCAAAGTTCTTAACATGTTTCGACTATGGCGTCTGAGGCGAGTCAGTTCCCTGTTTGCAAGACTTGAAAAGGACATTCGCTTCAATTACTTCTGGATTAGGTGCACGAAGCTCATCGCTGTAACCTTGTTTGCAGTGCACTGTGCTGGATGTTTTAACTATTTAATTGCTGATAGGTATCCTGATTCCAAACGAACCTGGATAGGTGCTGTGTATCCAAATTTTAAAGAAGAAAGTCTTTGGGACAGATATATAACTGCGATATACTGGTCAATTGTCACGCTTACTACCACCGGCTATGGAGATTTACATGCTGAGAACACCAGAGAGATGTTGTTTGATATTGCTTACATGTTGTTCAACTTAGGTTTAACATCATACATCATTGGAAACATGACTAACCTTGTAGTGCACTGGACCAGCCACACCAGAAACTTTAGGGATACTGTCAAAGCAGCTTCTGAATTTGCTTCCAGAAATCATTTGCCAAATCGCGTACATGATCAAATGTTGGCACACATATGTTTGAGGTTTAAAACAGAAGGACTGAAGCAGCAGGAAGCATTAAATGATCTTCCGAAGGCAATTCGATCGAGCATCGCACACCATCTCTTTTTTCCTGTCGTGCAGAAGGTCTACCTCTTCCAAGGAGTCTCCCATGACTTCCTTTTCCAACTGGTTTCAGAAATGGAAGCAGAGTATTTCCCACCAAAGGAAGAAGTGATACTGCAAAATGAGTCTCCTACCGACATTTATGTGCTGATTTCAGGGGCAGTGACTCTTGTTCGCAGCATTGATGGCCATGATCAAATTCTTGGCAAGGCAATTGCAGTAGATACATTTGGAGAGTTTGGAGTTTTATATCATGTACCGCAACCTTTCACAGTTCGGACCACAGAGCTTTCTCAGATTTTAAGACTGAACAGAACATCCTTAATGAATGTTTTAAAAGCAAATCCAGGAGATGCACAGATTATAATGGATAACCTTTTAATGAGATTAAAGGGGAATGAAGGATCCAGTTTGGAATATCCACATACCGATCCTGGATCAGTTCTACATAAACCGCTTCACGGAGGTAACACAATAGAAAGCTCTTCTGACGAGTCTACAAATAATTTATATGGCCATTCCTCAATGCATGAAGGAGAGTATATAAATATCAGAGACTCAGAGAATAGTTTGCATAAAGTGACTAATGATGTTCATATAGTCACTAATAACATAATACCTGAGGTTGGAAAAGAAGATCTCCATGCCGCTGTGTTGCCTGCGCATAAGGGGAAACTAGACATTGTTGAAATTCTGCTCGAAAGAGATGCAAAAGCAAAGAACCCAAATGCCATAGGGTTGACACACAAAGCTCTAGTACAACAATTAAAAAACAAGAGCGTTTCTGACCGTAAAACGAATTGTGAAAGCGAGAAGAAATCGGACGAACATAGAATAGAGATTGTGGAGCCACAAATCCTTAACCATTGCAGGAATGGCTCAACCAGAAATAGTAGACAGGATGGTATTAGAACTAATAACTTCCCATTTGAGAAAGTATACACAGACTCCAATACAAGAAAATCTAATTGTCCAAGTCATATAGAAATGGCAAGGTTCAACAAGAAGAGGGTAACAATCCATTTGCTAAGTGGATGGCAAAGTAACTCGCATGGACAGCATGGGAAACTGATAATCCTACCTGATTCATTAGAAGAACTGCTCAAAATTGCTGGAGAAAAATTTGGCGGCTTCAACCCCACAAAAGTAATTAATAAAGAGAATGCAGAGATAGACGACATTGATGTCATTCGAGATGGCGATCATCTCTTTCTTCTAGGCACTGATAGTGACTATTTGAGTGCATGA 2349 0.4049 MSLSRAKNFFQRFWSNELEIGSFTHSSFLSSDLLPSLGARINRETRLQKHLISPFNPHYRAWELLLVVLVIYSAWICPFEFAFLTYKQDGLFIIDNIVNGFFAIDIILTFFVAYLDSHSYLLIDDPKKIAIRYISTWFAFDICSTAPLEPISLLFTNRNSELGFKVLNMFRLWRLRRVSSLFARLEKDIRFNYFWIRCTKLIAVTLFAVHCAGCFNYLIADRYPDSKRTWIGAVYPNFKEESLWDRYITAIYWSIVTLTTTGYGDLHAENTREMLFDIAYMLFNLGLTSYIIGNMTNLVVHWTSHTRNFRDTVKAASEFASRNHLPNRVHDQMLAHICLRFKTEGLKQQEALNDLPKAIRSSIAHHLFFPVVQKVYLFQGVSHDFLFQLVSEMEAEYFPPKEEVILQNESPTDIYVLISGAVTLVRSIDGHDQILGKAIAVDTFGEFGVLYHVPQPFTVRTTELSQILRLNRTSLMNVLKANPGDAQIIMDNLLMRLKGNEGSSLEYPHTDPGSVLHKPLHGGNTIESSSDESTNNLYGHSSMHEGEYINIRDSENSLHKVTNDVHIVTNNIIPEVGKEDLHAAVLPAHKGKLDIVEILLERDAKAKNPNAIGLTHKALVQQLKNKSVSDRKTNCESEKKSDEHRIEIVEPQILNHCRNGSTRNSRQDGIRTNNFPFEKVYTDSNTRKSNCPSHIEMARFNKKRVTIHLLSGWQSNSHGQHGKLIILPDSLEELLKIAGEKFGGFNPTKVINKENAEIDDIDVIRDGDHLFLLGTDSDYLSA 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00526 782 Pfam Ion transport protein 60 306 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Car01g00526 782 Pfam Cyclic nucleotide-binding domain 397 481 IPR000595 -
Car01g00526 782 SMART cnmp_10 377 494 IPR000595 -
Car01g00526 782 CDD CAP_ED 377 490 IPR000595 -
Car01g00526 782 Gene3D Jelly Rolls 370 504 IPR014710 -
Car01g00526 782 ProSiteProfiles KHA domain profile. 704 782 IPR021789 -
Car01g00526 782 ProSiteProfiles cAMP/cGMP binding motif profile. 377 496 IPR000595 -
Car01g00526 782 SUPERFAMILY Voltage-gated potassium channels 54 299 - -
Car01g00526 782 Pfam KHA, dimerisation domain of potassium ion channel 703 772 IPR021789 -
Car01g00526 782 Gene3D - 60 300 - -
Car01g00526 782 Gene3D Helix hairpin bin 301 367 - -
Car01g00526 782 PANTHER POTASSIUM CHANNEL AKT1 1 781 IPR045319 GO:0005249|GO:0006813
Car01g00526 782 PRINTS EAG/ELK/ERG potassium channel family signature 72 79 IPR003938 GO:0005249|GO:0006813|GO:0016020
Car01g00526 782 PRINTS EAG/ELK/ERG potassium channel family signature 95 105 IPR003938 GO:0005249|GO:0006813|GO:0016020
Car01g00526 782 PRINTS EAG/ELK/ERG potassium channel family signature 106 115 IPR003938 GO:0005249|GO:0006813|GO:0016020
Car01g00526 782 PRINTS EAG/ELK/ERG potassium channel family signature 247 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Car01g00526 782 PRINTS EAG/ELK/ERG potassium channel family signature 273 284 IPR003938 GO:0005249|GO:0006813|GO:0016020
Car01g00526 782 PRINTS EAG/ELK/ERG potassium channel family signature 291 300 IPR003938 GO:0005249|GO:0006813|GO:0016020
Car01g00526 782 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 1 781 - -
Car01g00526 782 SUPERFAMILY cAMP-binding domain-like 304 497 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00526 Car-Chr1 4202525 4206219 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00526 683 772 Ion Channels AT5G46240 50.538 1.45e-19 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00526 K21867 - gmx:100811356 1209.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00526 01 4202525 4206219 Car01g00526 01 4202525 4206219 ECH