Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00501 ATGGCTTTTGAGCCGTTGGTTTGGTATTGTCAGCCGGTTGCTAATGGAGTGTGGACAAGAACAGTCCAGAATGCATTTGGTGCTTACACTCCTTGTGCGGTTGACTCTTTGGTGATTGGTGTTTCTCATTTGGTAGTTCTAGCGTTGTGCATTTATCGCATATGGTTGATTAAGAAGGATTTCAAAACCAAAAGGTATCGTTTAAGGTCAAACATCTACAATTATGTGATTGGGGTTTTGGCTGCATATTGTATGGCAGAGCCTTTATACAGATTGATCATGGGAATATCAGTTCTAAATTTAGATGGGGAGACTCAACTTGCTCCATTTGAGATAATTTCACTGATTGTTGAGGCTCTTGCTTGGTGCTCTATGCTGATTTTGCTTGCGATTGAAACTAAAGTCTACATCCGTGAATTCCGATGGTTTGTTCGATTTGGTTTGATTTATGCTATTGTAGGGGATGCCGTTATGATCAATTTTGTCCTTTCAGTGCAGGAACTGTATAGCAGGAAAGTAATATTTATCTCCTCTTGGGTCCAGGTTTTGTTTGGAATACTTTTGCTTGTGTACGTTCCTACTCTGGATCCTTATCCAGGTTATACTGCCATTGCTAGTGAAATGGTTACTGATGCTGCATACGATGAACTCCCTGACGGAGAGCTGATATGTCCTGAAGCGCGAGCTAACTTATTGTCAAGGATACTTTTTTCTTGGATGAATCCCATCATGAGACTAGGATATGAAAGACCACTTACAGAGAAAGATGTATGGAAATTAGATACATGGGATCGGACAGAGGCATTGCACAATAAATTCCAGAAATGTTGGGCCGAGGAGTCTCAGAAGTCAAAACCTTGGCTTTTGAGAGCATTGAATGCAAGCCTTGGAGGAAGGTTTTGGTTTGGAGGCTTTTTCAAGATTGGCAATGATCTTTCCCAATTTACGGGCCCACTTATATTGAATCAGCTTCTACAGTCTATGCAAAATGGTGATCCGGCCGGGATGGGCTACATTTATGCCTTTTCAATATTTCTTGGAGTGGTCTTTGGGGTGTTATGTGAAGCTCAATATTTTCAGAATGTCATGCGTGTTGGTTTTCGGCTGAGATCAACGCTGGTGGCCGCCGTATTTCGTAAGTCTCTAAGGCTTACTCATGAAGCGCGAAAGCAATTTGCATCTGGAAAAATTACCAACTTGATGACTACTGATGCTGAGTCACTTCAGCAAATATGCCAATCACTTCACACTTTGTGGTCAGCTCCCTTTCGAATTACTGTTGCTATGGTTCTTCTTTACCAAGAACTAGGTGTTGCTTCGCTTATTGGTGCTATGTTGCTAGTTCTCATGTTTCCATTACAGACATTAATCATCAGCAGAATGCAGAAGCTATCTAAGGAAGGATTACAACGCACAGACAAGAGAATCGGTCTCATGAATGAAATTTTGGCTGCTATGGACACTGTAAAATGTTATGCATGGGAGAGTAGTTTCCAGTCTAGAGTAGTGAATGTACGAAATGATGAATTATCATGGTTTCGAAAAGCATCGTTACTTGGAGCGTGTAATTCATTTATACTAAATAGCATTCCAGTTTTCGTAACTGTGATTTCGTTTGGAGTTTTCACCTTGCTTGGAGGGGATTTGACACCTGCAAGAGCTTTCACATCGCTTTCTCTGTTTGCTGTGCTACGATTTCCTCTCTTCATGCTTCCGAATATTATAACTCAGGTCGTCAATGCAAATGTATCGTTGAAACGTCTGGAAGAGTTGCTCTTAGCTGAAGAGAGAATACTTCTACCAAATCCACCTCTTGAGCCAGAGCTACCAGCCATCTCGATCAGGAACGGATACTTCTCTTGGGATGCAAAGGCAGAGAGGGAAACATTGTCTAACATAAATTTGGATATACCTGTTGGTAGCCTAGTTGCTGTTGTTGGCAGCACAGGAGAAGGGAAGACGTCACTCATATCTGCAATGCTTGGAGAACTTCCTCCAATTGCAGATTCAACTGCTGTTATGAGAGGGACAGTAGCTTATGTACCCCAAGTTTCATGGATTTTTAATGCAACTGTACGGGATAATGTTTTGTTTGGTTCTGCCTTTGACCCAATAAGATATGAAAGGGCAATAAATGTGACTGAACTGCAACACGACCTTGAGTTACTACCTGGCGGTGACCTAACTGAAATTGGTGAAAGAGGGGTAAACATCAGCGGTGGCCAGAAGCAGAGAGTATCCATGGCTAGAGCTGTCTACTCCAATTCTGATGTGCTCGTCTTTGATGACCCCCTAAGTGCACTGGATGCACATGTCGCTAGACAGGTTTTTGATAAATGTATAAAGGGAGAGTTGAGAGGGAAGACTCGAGTTCTTGTTACAAATCAGCTGCATTTCCTTTCCCAGGTTGATAGAATCATTTTGGTCCATGAAGGTATGGTGAAGGAGGAAGGGACTTTTGAGGAACTCTCTAGCCAGGGACTGTTGTTCCAAAAGCTGATGGAAAATGCGGGGAAAATGGAGGAGTATGAAGAAGAAAAGGTAGATATTGAAGCTACTGATCAGAAATCCTCTTCAAAACCAGTGGTCAATGGAGCAGTTAACAATCATGCAAAGAGTGAAAATAAACCAAAAGGAGGAAAATCTATCCTTATTAAACAGGAAGAACGGGAAACAGGTGTTGTCAGTTGGAATGTTCTAACGAGGTACAAAAATGCATTAGGAGGCTCTTGGGTTGTTCTAGTACTATTTGGATGCTATTTCTTAAGTGAAACGTTACGAGTGTCAAGTAGCACATGGTTAAGCCACTGGACTGATCAGAGTACTGTAGAGGGTTATAATCCCGCCTTCTACAATCTCATCTATGCAACTCTATCATTTGGTCAGGTTTTGGTGACTCTAACTAATTCTTACTGGTTAATCATATCAAGTCTTTATGCTGCTAGAAGGCTGCATGAAGCCATGCTTCACTCCATCTTACGAGCTCCGATGGTCTTTTTCCACACAAATCCACTCGGAAGGGTCATCAATAGGTTTGCAAAAGATCTAGGTGATATTGATCGTAATGTGGCTCCATTTGTCAACATGTTTTTAGGTCAAATTTCCCAACTTCTTTCGACCTTCGTCCTGATAGGGATCGTGAGCACAATGTCCTTGTGGGCCATAATGCCATTGTTGGTATTGTTCTATGGAGCATATTTATACTATCAGAGCACTGCTCGTGAAGTAAAGCGATTGGATTCCATTAGCAGATCTCCTGTTTATGCACAATTTGGGGAAGCGCTGAATGGTCTATCAACGATTCGTGCTTACAAAGCTTATGATCGAATGGCGGATATCAACGGGAGATCCATggacaacaacattcggttcacgctggtaaacttaagcggaaaccgatggctTGCGATCCGATTGGAAACCCTAGGAGGCCTCATGATATGGTTCACTGCAACCTTCGCCGTGGTGCAGAATGGTAGAGCAGAGAACCAGCAAGAATTTGCATCCACCATGGGATTACTTCTCAGTTATGCTTTGAATATTACTAGCTTGCTCACCGGTGTGCTCAGACTTGCAAGTTTGGCTGAGAATAGTTTAAATTCTGTCGAGCGGATTGGAACTTACATTGATTTGCCTTCGGAGGCTCCTTCTGTGATTGATGATAATCGCCCTCCACCTGGGTGGCCTTCCTCAGGCTCCATCAAATTTGAAGAAGTTGTTCTTCGCTACAGGCCTGAACTTCCTCCTGTGCTGCATGGCATATCTTTCACAATTTTTCCAAGCGATAAGGTTGGCATCGTTGGGAGGACTGGCGCAGGAAAATCCAGCATGCTAAATGCCCTGTTTCGAATCGTGGAATTGGAAAAGGGAAGAATATTAATTGATGATCATGATATTGCTAAGTTTGGGCTGGCTGATTTGCGGAAAGTTCTTGGCATTATACCACAATCTCCTGTTCTCTTTTCAGGAACTGTGCGATTTAATCTTGATCCATTTACTGAACACAATGATGCTGACCTCTGGGAGGCTCTGGAGAGGGCACATTTGAAGGATGTGATAAGGAGGAATTCTTTGGGGCTGGATGCCGAGGTATCTGAGGCAGGCGAGAACTTCAGTGTTGGACAGAGGCAACTGTTAAGTCTTGCCAGGGCTTTGCTGCGGAGATCGAAGATTTTAGTACTTGACGAGGCAACTGCAGCTGTTGATGTCAGAACAGATGCACTCATACAGAAAACAATCAGAGAGGAATTTAAATCCTGTACAATGCTCATTATTGCTCATCGCCTCAACACCATTATTGATTGTGATAGGATTATTTTGCTTGATGGAGGCAAGGTTCTTGAATATGATACCCCCGAGGAGCTGCTGTCAAATGAGAGTAGTGCTTTTTCTAAGATGGTGCAAAGTACAGGAGCTGCAAATGCCCAATACTTACGCAGCTTAGTACATGGCGGTGACAAGACAGAAAGAGAAGAGAACAAGCATCTGGATGGTCAGAGAAAATGGCTAGCTTCTTCTCGGTGGGCTGCCGCAGCTCAGTTTGCTCTTGCTGTCAGTCTCACTTCATCGCAGAATGATCTACAACGATTGGAAGTAGAAGATGAGAATAGTATTCTCAATAAGACAAAGGATGCTCTGATAACTTTGCAGGGTGTTTTGGAAAGGAAGCATGATAAAGAAATTGAGGAATCTTTAAACCAACGCCAAATATCCCCTGAAGGATGGTGGTCATCGCTTTACAAGATGATTGAAGGTCTTGCTATGATGAGCAGATTGGCCAGGAACAGGCTCCATCAATCAGACTATAGTTTTGATGATAAATCAATTAACTTTGATCAAGTTGATACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAG 4902 0.4174 MAFEPLVWYCQPVANGVWTRTVQNAFGAYTPCAVDSLVIGVSHLVVLALCIYRIWLIKKDFKTKRYRLRSNIYNYVIGVLAAYCMAEPLYRLIMGISVLNLDGETQLAPFEIISLIVEALAWCSMLILLAIETKVYIREFRWFVRFGLIYAIVGDAVMINFVLSVQELYSRKVIFISSWVQVLFGILLLVYVPTLDPYPGYTAIASEMVTDAAYDELPDGELICPEARANLLSRILFSWMNPIMRLGYERPLTEKDVWKLDTWDRTEALHNKFQKCWAEESQKSKPWLLRALNASLGGRFWFGGFFKIGNDLSQFTGPLILNQLLQSMQNGDPAGMGYIYAFSIFLGVVFGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEARKQFASGKITNLMTTDAESLQQICQSLHTLWSAPFRITVAMVLLYQELGVASLIGAMLLVLMFPLQTLIISRMQKLSKEGLQRTDKRIGLMNEILAAMDTVKCYAWESSFQSRVVNVRNDELSWFRKASLLGACNSFILNSIPVFVTVISFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIITQVVNANVSLKRLEELLLAEERILLPNPPLEPELPAISIRNGYFSWDAKAERETLSNINLDIPVGSLVAVVGSTGEGKTSLISAMLGELPPIADSTAVMRGTVAYVPQVSWIFNATVRDNVLFGSAFDPIRYERAINVTELQHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVLVFDDPLSALDAHVARQVFDKCIKGELRGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEELSSQGLLFQKLMENAGKMEEYEEEKVDIEATDQKSSSKPVVNGAVNNHAKSENKPKGGKSILIKQEERETGVVSWNVLTRYKNALGGSWVVLVLFGCYFLSETLRVSSSTWLSHWTDQSTVEGYNPAFYNLIYATLSFGQVLVTLTNSYWLIISSLYAARRLHEAMLHSILRAPMVFFHTNPLGRVINRFAKDLGDIDRNVAPFVNMFLGQISQLLSTFVLIGIVSTMSLWAIMPLLVLFYGAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADINGRSMDNNIRFTLVNLSGNRWLAIRLETLGGLMIWFTATFAVVQNGRAENQQEFASTMGLLLSYALNITSLLTGVLRLASLAENSLNSVERIGTYIDLPSEAPSVIDDNRPPPGWPSSGSIKFEEVVLRYRPELPPVLHGISFTIFPSDKVGIVGRTGAGKSSMLNALFRIVELEKGRILIDDHDIAKFGLADLRKVLGIIPQSPVLFSGTVRFNLDPFTEHNDADLWEALERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRIILLDGGKVLEYDTPEELLSNESSAFSKMVQSTGAANAQYLRSLVHGGDKTEREENKHLDGQRKWLASSRWAAAAQFALAVSLTSSQNDLQRLEVEDENSILNKTKDALITLQGVLERKHDKEIEESLNQRQISPEGWWSSLYKMIEGLAMMSRLARNRLHQSDYSFDDKSINFDQVDTXXXXXXXXXXXXXXXXX 1633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00501 1633 MobiDBLite consensus disorder prediction 859 879 - -
Car01g00501 1633 ProSitePatterns ABC transporters family signature. 738 752 IPR017871 GO:0005524
Car01g00501 1633 Pfam ABC transporter transmembrane region 301 568 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car01g00501 1633 Pfam ABC transporter transmembrane region 914 1158 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car01g00501 1633 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 914 1197 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car01g00501 1633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1224 1466 IPR027417 -
Car01g00501 1633 PANTHER ABC TRANSPORTER C FAMILY MEMBER 1 33 1508 - -
Car01g00501 1633 SUPERFAMILY ABC transporter transmembrane region 286 592 IPR036640 GO:0005524|GO:0016021
Car01g00501 1633 CDD ABC_6TM_ABCC_D2 913 1209 IPR044726 GO:0140359
Car01g00501 1633 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 612 836 IPR003439 GO:0005524
Car01g00501 1633 CDD ABCC_MRP_domain1 612 812 - -
Car01g00501 1633 Pfam ABC transporter 1251 1399 IPR003439 GO:0005524
Car01g00501 1633 CDD ABCC_MRP_domain2 1232 1452 - -
Car01g00501 1633 Gene3D - 605 861 IPR027417 -
Car01g00501 1633 SMART AAA_5 639 817 IPR003593 -
Car01g00501 1633 SMART AAA_5 1260 1453 IPR003593 -
Car01g00501 1633 SUPERFAMILY ABC transporter transmembrane region 911 1214 IPR036640 GO:0005524|GO:0016021
Car01g00501 1633 ProSitePatterns ABC transporters family signature. 1371 1385 IPR017871 GO:0005524
Car01g00501 1633 Gene3D - 1217 1470 IPR027417 -
Car01g00501 1633 Pfam ABC transporter 630 765 IPR003439 GO:0005524
Car01g00501 1633 Gene3D ABC transporter type 1, transmembrane domain 268 598 IPR036640 GO:0005524|GO:0016021
Car01g00501 1633 Gene3D ABC transporter type 1, transmembrane domain 878 1215 IPR036640 GO:0005524|GO:0016021
Car01g00501 1633 CDD ABC_6TM_ABCC_D1 307 584 IPR044746 GO:0140359
Car01g00501 1633 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1234 1468 IPR003439 GO:0005524
Car01g00501 1633 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 33 1508 - -
Car01g00501 1633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 608 835 IPR027417 -
Car01g00501 1633 Coils Coil 833 853 - -
Car01g00501 1633 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 301 580 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00501 Car-Chr1 3972458 3988054 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00501 1231 1474 Calmodulin-binding Proteins AT2G36910 32.000 1.96e-30 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00501 - - gmx:100795004 2833.9