Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00496 ATGGGAGACCTAGAAAAAATGGGAAGAGAACTCAAATGTCCAATCTGTTGGAGTTTACTACATTCTGCGGTTTCACTCACATGCAATCATCTTTTCTGCAACTCGTGTATAATTAAGTCCATGAAATCTTCATCTTCTTGTCCTGTTTGTAAAATACCCTTCACTCGTCGAGAGGTTCGTCCTGCTCCTCACATGGACAACTTGGTTACCATCTACAAAAACATGGAAGCTGCTTCCGGAATCAATTTATTCGTCACTCAAAATCCACCTGCTACCAATTCACCAGATGAGGGAAAGCAATGTGAAGGTGATGCAGCTGATGCTGATTTTGGTGAGAAGGGAACTGGTGGAACTCATGAAAATCATGCTGAGGAAAAAACCCCGAAGACAAAGAAGTCGAGAAAGAAGCTTAAGACTGGTACCAAAAGTTCAGCTTCTGACTGCGAGAAGCCTTCTTTTCCTGCAAAGAAAAGAGTTCAGGTGCCACAGGATATTCTTTCAGAAACTCCACTGAGGAATTTTAAGTCTGGAGGCTCTCTTAGTGAGATTAACCAAGAAGGAACACATAACATTTCAATCAAGGCAAATGAAAGGCCACTCCAAAGTGAAAAAGGTGATCAGGTGAAAGAACCTTTCTTTTGGTTAAGAGAGGAGGGAGATGTTGAAAAGTTAAGTCAGGGAACTGATGAGGATCAACTTATTGATGGCCCAACACCAGTTCCTCCTTCATTCAGTGATCTCAAAGATGCTGATGATGGAAGTCCTTCAAAACAAGCTCCATCAGATGAGGTGCAAAACAAACCATCTGTTGATTTATTTGATAGTGAGATGTTTGAATGGACGCAAAAGCCATGCTCCCCTGAATTATTTTCCACTCCCATCAAAATGCAGGTTGAGGATATTCTTGAGATTGATGAAAATATAAAGGAATTGGTAACAGCATCGCAAGAACATCAGTCAAGTACTGATGCTTACGATACAAACTTTGAGAATTCCATAGTAGGAAATCAATTTGCTGATGTGTTACCACCAGGCATGTCTTCACAAATTAGAAGTTTTGATGATCTAAATGGAGTGAAGAGGTATACAAAGAGAAACAGGAAGGCTACAGAAAAAGCTAGGCAAGACCAGATTAGGGAACAAAAATGTCAAAATGATGGAATAAATATGGATTCAAATATAGCATCCAAAGTCATTGAGGAGCAATCGTTGGACTACAAGCACGGAGCTTCTAACCTGAAAAAGTCTAATAGAAGGAGCAAGACGGTTTTGTTCGTTACCAGTACAGATTCAACGCCTCAAAGTGCTGGTATGGTCTCCAATATGCTAGGAGTTCAAAGCAATGGTGAAGGGAAGATGGCTAAGAATTCATATACTTCAGCATCTAAAGAAGGTAATGAGATGCGATGTCCTTGGAAGATTGCTGGAAAAAGTCAAGTGATAAGAGCCGGAAAACAAGAGCTGGATGATGTGCATGACCCACCTGAAGATTTATCTTCAGAGCAAAACCAGTGCAATGAGTTTGCTGGTTCTGCTTCATTCACTTTAAGTCTGCAGACTTATAATAATGGAAAGGCTGCTAATACTGGGAAAAGAAAAAGCAGTTTGTCCAGAAATTCTATGTCTTGCAGTAAAGAACAGAAGAGTGCTAAAAAGTCAAAAGTTTCCCCTGATTATATCTCTAGGACTAAAAAGGATGAGGACATTCAACTAAATAAAAGTATTAAGCAAGGTACTGATGTCAGGGCTTTGAATGATAATTCAAAAGAGAAACACTGTCATTTGACAGACAAACCAGTTTTAAAGAAATGTGTGAGCCATGTCAAAAAGTACCAATGTGCCTTCTGTCTCTCATCAGAAGAATCTGAGGCTTCTGGCTCAATCGTGCATTATTTTGACGGCAAGCCTGTAGCTGATGATTATGAAGGAGGATCTAAAGTCGTACATTGTCACAGGAATTGCACTGAATGGGCCCCAAACGTATACTTTGAAGATGATAATGCAATAAATCTTGAAGCTGAAATAAGTAGAAGTCGGAGAATCAAATGTAATTTTTGTGGACTTAAAGGTGCTGCCCTCGGTTGCTATGAGAAAAGTTGTCGCAAAAGCTTCCATGTTCCTTGTGCCAAGTGGACTTCTCAATGTCGATGGGATATGGAAAACTTTGTCATGTTATGCCCTCTACATGCTCCCTCCATGTTGCCGTATGAAAGTTCAGGATCCCAACACAAGAGCAAGAAATTTACCGCTAAGAAGGAAAAAAGCTGTAGTATCAAACATGACACTACAAGCCAAAGTCGAATTGCTCAAGGATCTTACAAGAAAATTGTGCTGTGTTGTTCAGCTCTATCCGTACAGGAGAGGGATGTTGTTTCTGAATTTGAAAGAGTATCCAAGGTTACAGTTTTGAAAACCTGGGATTCAAGTGTTACCCATGTAATAGCATCAACAAATGAAAATGGGGCATGCCGAAGGACTCTCAAAGTATTGTTGGGTATTCTAGAAGGAAAGTGGATTCTTAGCATTGAGTGGATCAAAGCTTGCATGAAAGAAACAAGACCTGTTGATGAGGAGCCCTATGAAATTAATGTCGACGTCCATGGAATTAGGGATGGTCCTCGTCTTGGACGACTAAGAGCACTGGACAAGCAACCAAAGCTTTTTTATGGCTGCAAGTTTTATTTCATGGGAGATTTTATCCAGTCATACAAGTGCTATCTGCAAGACCTTGTGATTGCTGCTGGAGGGATTGTTCTGCATAGAAAACCAGTGTCAGCTGACCAAAAAGCAATACTACCTGATGTGCATCCACAACAAACCCTCATAATCTACAGTCTTGAGTTTCCTGCTAAATGCAATCCTTTGGAAAAGGATGCAATTTTTTGCCAAAGACAATCTGATGCAGAGGTTTTGGCAAGGTCTACTGGTTCAAATGTTGCAAGCAATACGTGGATTCTGAATTCAATTGCTGGCTGCAAGTTGCAAAGCCTTACTCAATAA 3000 0.4033 MGDLEKMGRELKCPICWSLLHSAVSLTCNHLFCNSCIIKSMKSSSSCPVCKIPFTRREVRPAPHMDNLVTIYKNMEAASGINLFVTQNPPATNSPDEGKQCEGDAADADFGEKGTGGTHENHAEEKTPKTKKSRKKLKTGTKSSASDCEKPSFPAKKRVQVPQDILSETPLRNFKSGGSLSEINQEGTHNISIKANERPLQSEKGDQVKEPFFWLREEGDVEKLSQGTDEDQLIDGPTPVPPSFSDLKDADDGSPSKQAPSDEVQNKPSVDLFDSEMFEWTQKPCSPELFSTPIKMQVEDILEIDENIKELVTASQEHQSSTDAYDTNFENSIVGNQFADVLPPGMSSQIRSFDDLNGVKRYTKRNRKATEKARQDQIREQKCQNDGINMDSNIASKVIEEQSLDYKHGASNLKKSNRRSKTVLFVTSTDSTPQSAGMVSNMLGVQSNGEGKMAKNSYTSASKEGNEMRCPWKIAGKSQVIRAGKQELDDVHDPPEDLSSEQNQCNEFAGSASFTLSLQTYNNGKAANTGKRKSSLSRNSMSCSKEQKSAKKSKVSPDYISRTKKDEDIQLNKSIKQGTDVRALNDNSKEKHCHLTDKPVLKKCVSHVKKYQCAFCLSSEESEASGSIVHYFDGKPVADDYEGGSKVVHCHRNCTEWAPNVYFEDDNAINLEAEISRSRRIKCNFCGLKGAALGCYEKSCRKSFHVPCAKWTSQCRWDMENFVMLCPLHAPSMLPYESSGSQHKSKKFTAKKEKSCSIKHDTTSQSRIAQGSYKKIVLCCSALSVQERDVVSEFERVSKVTVLKTWDSSVTHVIASTNENGACRRTLKVLLGILEGKWILSIEWIKACMKETRPVDEEPYEINVDVHGIRDGPRLGRLRALDKQPKLFYGCKFYFMGDFIQSYKCYLQDLVIAAGGIVLHRKPVSADQKAILPDVHPQQTLIIYSLEFPAKCNPLEKDAIFCQRQSDAEVLARSTGSNVASNTWILNSIAGCKLQSLTQ 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00496 999 ProSiteProfiles BRCT domain profile. 883 999 IPR001357 -
Car01g00496 999 SMART PHD_3 682 730 IPR001965 -
Car01g00496 999 ProSiteProfiles Zinc finger RING-type profile. 13 51 IPR001841 -
Car01g00496 999 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 607 731 IPR013083 -
Car01g00496 999 MobiDBLite consensus disorder prediction 525 563 - -
Car01g00496 999 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 3 997 IPR031099 GO:0006281|GO:0006974
Car01g00496 999 MobiDBLite consensus disorder prediction 219 267 - -
Car01g00496 999 MobiDBLite consensus disorder prediction 525 544 - -
Car01g00496 999 MobiDBLite consensus disorder prediction 166 197 - -
Car01g00496 999 ProSiteProfiles Extended PHD (ePHD) domain profile. 610 730 IPR034732 -
Car01g00496 999 MobiDBLite consensus disorder prediction 100 130 - -
Car01g00496 999 MobiDBLite consensus disorder prediction 85 207 - -
Car01g00496 999 SMART BRCT_7 771 852 IPR001357 -
Car01g00496 999 SMART BRCT_7 885 992 IPR001357 -
Car01g00496 999 Gene3D BRCT domain 884 991 IPR036420 -
Car01g00496 999 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 84 IPR013083 -
Car01g00496 999 CDD BRCT_Bard1_rpt1 776 855 - -
Car01g00496 999 SUPERFAMILY BRCT domain 776 874 IPR036420 -
Car01g00496 999 MobiDBLite consensus disorder prediction 545 563 - -
Car01g00496 999 SMART ring_2 13 50 IPR001841 -
Car01g00496 999 Pfam Zinc finger, C3HC4 type (RING finger) 12 50 - -
Car01g00496 999 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN 3 997 - -
Car01g00496 999 Pfam BRCA1 C Terminus (BRCT) domain 801 849 IPR001357 -
Car01g00496 999 SUPERFAMILY BRCT domain 887 997 IPR036420 -
Car01g00496 999 Gene3D BRCT domain 772 878 IPR036420 -
Car01g00496 999 SUPERFAMILY RING/U-box 4 74 - -
Car01g00496 999 ProSiteProfiles BRCT domain profile. 801 862 IPR001357 -
Car01g00496 999 Pfam PHD-like zinc-binding domain 651 729 - -
Car01g00496 999 ProSitePatterns Zinc finger RING-type signature. 28 37 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00496 Car-Chr1 3922969 3928942 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00496 6 87 RAD5 or RAD16-like Gene Family AT5G22750 31.765 3.00e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00496 K10683 - gmx:100804958 1282.32