Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00487 ATGAGGCTTTCTTCAGCTGGTTTTAGTCCTCCACCCCAAGAAGGGGAAAAGCGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGCCCTCTTGTCTCTTTACCAGCAGTTGGAAGTAGAGTGGTGTACTTTCCACAAGGTCACAGTGAACAGGTAGCTGTGTCAACAAACAAGGAAGTGGATGCTCATATCCCAAACTATCCAAGCTTACCTCCTCAGCTCATATGCCAACTTCATAATTTGACTATGCATGCTGATGTGGAAACTGATGAAGTGTACGCGCAGATGACCTTGCAACCTCTGAATGCTCAAGAGCAAAAAGAGGCTTACCTTCCAGCCGAGTTAGGCACTGCGAGTAAACAACCGACAAACTACTTCTGCAAGACCTTGACTGCTAGTGACACAAGTACTCACGGGGGGTTCTCTGTGCCTCGAAGAGCGGCTGAGAAAGTTTTTCCTTCATTGGACTTCTCCCAGCAGCCTCCTGCTCAAGAGTTAATAGCAAGGGATTTGCATGGTCACGAATGGAAATTCAGACATATCTTCCGGGgccagcccaaaaggcatctacttacaactggatggagtgttttcgtgagtgctaaaagacttgtTGCCGGTGATTCTGTACTGTTCATCTGGAACGAAAAGAACCAATTGCTTCTTGGAATCCGCCGTGCTAGCCGCCCACAAACTGTGATGCCTTCATCGGTGTTGTCAAGTGATAGTATGCACTTAGGACTTCTTGCCGCAGCAGCTCATGCGGCTGCAACCAATAGTCGGTTCACTATTTTCTATAACCCACGTGCTAGTCCATCAGAGTTTGTTATACCCTTAACTAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGTTTCAGGATGATGTTTGAAACAGAGGAGTCTAGTGTGCGAAGATACATGGGTACGATAACTGGCATTAGTGACCTTGATTCTGTTCGGTGGCCAAACTCACATTGGCGCTCGGTAAAGGTTGGGTGGGATGAATCGACTGCAGGAGAGAAGCAACCTAGAGTGTCTTTGTGGGAAATTGAGCCATTAACAACATTTCCTATGTATCCATCACCGTTCCCCCTTAGGCTTAAACGACCGTGGCCTCCAGGATTGCCTTCATTCCATGGCATGAAGGATGATGATTTTGGCATGAACTCTCCTTTATTGTGGCTTCGAGACACCGATAGAGGGCTTCAATCTCTGAACTTTCAAGGGATTGGTGTTAATCCTTGGATGCAGCCAAGGTTTGATCCTTCCATGCTGAATATGCAAGCAGATATGTATCAAGCTGTGGCTGCTGCTGCGCTTCAGGACATGAGAAGTGTAGATCCTTCGAAACAGCATCCTGGTTCTTTACATCAATTCCAGCAACCGCTAAACTTTGCAAACCGGACCGCTGCTTTAATGCAGGCGCAGATGTTGCAACATTCACAACAACCTCAACAGGCTTTTCAAAACAATCTGGAGAACCAACATCTGTCGCAATCTCAACCGCAAACTCAGACAcatcctcagcagcatcttcagcatcagcactcattcaataatcagctccatcatcataaccagcagcaacaacaACCAACTCAACAAGTGGTGGATAATAGTCAGCAGATTTCTGGTGCAGTCTCAACAATGTCTCAGTTTGTTTCAGCAGCTCCTCAACTTCAATCCCCACCTATGCAACAAGCTCTCTCTTCACTATGCAACCAGCAGAGTTTTTCTGACTCAAATGTGAACTCTTCAACCACTATTGTTTCTCCTTTGCACAGTATCTTAGGTTCATTTCCACAGCAAGATGAAACATCACACCTTCTGAGTCTTCCTAGAACAAACTCTTGGGTTCCTGTTCAAAATTCGACCGGTTGGCCCTCCAAGCGTGTTGCGGTGGATCCTCTCCTTTCTTCGGGGGCAGCTCAATGTATTCTGCCACAGGCGGAGCAGTTAGGGCAGCCACAGAATACCATTTCTCAAAATGCTATTACATTGCCACCATTTCCGGGTAGGGAGTGCTCAATAGACCAAGAAGGGAGCAATGATCCACAAAGTAATCTTTTATTTGGCGTCAATATAGATCCCTCGTCTCTTCTAATGCATAATGGTATGTCAAACTTCAAGGGGATCAGTGGCGGCAACAGTGACTCCTCAACCATGCCCTATCAATCTTCTAATTACATGAACACCGCAGGCAATGATTCTTCACTGAACCACGGAGTTACGTCTAGTATTGGTGACTCCGGCTTCTTGCGTACCCCAGAAAATGCGCAGCAAGGAAACAACAACCCGCTGAACGAGACCTTTGTGAAGGTTTATAAAGCAGGGTCCTACGGAAGATCATTGGATATCACCAACTTCAGCAGCTACCATGAGCTGCGCGGTGAGCTCGCCCGAATGTTTGGACTAGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGAGAGAATGATGTTCTTCTCCTCGGTGATGGCCCTTGGCCGGAATTTGTGAGTAGTGTATGGTGCATCAAGATACTTTCGCCCGAGGAAGTGCAGCAAATGGGAAACACTGGCCTCGGGCTTTTGAACTCGGTTCCAATTCAAAGGCTCTCAAATGGCATCTGCGATGGCTACGTGAGCCGTCAAGATCCAAGAAGTTTAAGCAGTGGAATAACAACCGTTGGATCTCTAGACTACTGA 2727 0.4455 MRLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNLTMHADVETDEVYAQMTLQPLNAQEQKEAYLPAELGTASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSQQPPAQELIARDLHGHEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLTKYVKAVYHTRVSVGMRFRMMFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGEKQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGMKDDDFGMNSPLLWLRDTDRGLQSLNFQGIGVNPWMQPRFDPSMLNMQADMYQAVAAAALQDMRSVDPSKQHPGSLHQFQQPLNFANRTAALMQAQMLQHSQQPQQAFQNNLENQHLSQSQPQTQTHPQQHLQHQHSFNNQLHHHNQQQQQPTQQVVDNSQQISGAVSTMSQFVSAAPQLQSPPMQQALSSLCNQQSFSDSNVNSSTTIVSPLHSILGSFPQQDETSHLLSLPRTNSWVPVQNSTGWPSKRVAVDPLLSSGAAQCILPQAEQLGQPQNTISQNAITLPPFPGRECSIDQEGSNDPQSNLLFGVNIDPSSLLMHNGMSNFKGISGGNSDSSTMPYQSSNYMNTAGNDSSLNHGVTSSIGDSGFLRTPENAQQGNNNPLNETFVKVYKAGSYGRSLDITNFSSYHELRGELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVSSVWCIKILSPEEVQQMGNTGLGLLNSVPIQRLSNGICDGYVSRQDPRSLSSGITTVGSLDY 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00487 908 MobiDBLite consensus disorder prediction 500 522 - -
Car01g00487 908 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car01g00487 908 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 888 IPR044835 GO:0003677|GO:0006355|GO:0009725
Car01g00487 908 Gene3D - 291 363 - -
Car01g00487 908 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Car01g00487 908 Gene3D - 125 228 IPR015300 -
Car01g00487 908 Gene3D - 772 864 - -
Car01g00487 908 ProSiteProfiles PB1 domain profile. 775 859 IPR000270 GO:0005515
Car01g00487 908 PANTHER AUXIN RESPONSE FACTOR 1 888 - -
Car01g00487 908 SUPERFAMILY CAD & PB1 domains 774 850 - -
Car01g00487 908 CDD B3_DNA 126 227 IPR003340 GO:0003677
Car01g00487 908 SMART B3_2 127 229 IPR003340 GO:0003677
Car01g00487 908 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Car01g00487 908 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00487 Car-Chr1 3851808 3858525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00487 1 483 B3 DNA Binding Superfamily AT1G30330 85.861 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Car01g00487 B3 3.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00487 - - gmx:100796447 1498.8